Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D03
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.025
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.41 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.2  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   6.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   8.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.025
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 148  TTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 264
            TT A  YAR+  +     ++ + P  Q++  Q QPSRNN
Sbjct: 1267 TTGAAVYARV--IAPTTITSSQSPGNQQQTIQTQPSRNN 1303


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 73  KLNPPLHSRLVPGGHCTK*RGC*RLTTTAQTYAR 174
           +L+ PLH  L+P G C     C +  +T  T  R
Sbjct: 356 RLSHPLHGNLLPPGVCYTCDVCGKTLSTKLTLKR 389


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 1   RRTLHRKGFTVVYNESKGYQKAR*KLNPPLHSRLVP 108
           RRTLH    ++  ++   Y K+R +    L   L+P
Sbjct: 161 RRTLHMNRTSLKTSKIVSYPKSRSRKKGGLKDNLIP 196


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 178 VALHRSVR*WLAFNNLFTLYSDLLAPALNGA 86
           + LH ++   L  +NLF L+     P+L GA
Sbjct: 22  IGLHNNMCTSLNLSNLFWLFVGTYFPSLIGA 52


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 193  QPSSAPRGPSKQKRLRQPQPSR 258
            Q    P+  S+Q + +QPQP +
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQ 1533


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 53  PLLSLYTTVNPFL 15
           P++ LY T +PFL
Sbjct: 71  PMVGLYATRSPFL 83


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 284 NLLSAYKLFRLGCGCL 237
           NLL+AY  F+L   C+
Sbjct: 56  NLLNAYVRFKLVTDCI 71


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 234 PFLL*WASGSGGWLKHD 184
           PFL+ W     GW++ +
Sbjct: 171 PFLIHWIWTPHGWMRRN 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,237
Number of Sequences: 438
Number of extensions: 1214
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)