Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_D03
         (330 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    29   0.57 
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    27   3.0  
At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            27   3.0  
At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family prot...    27   3.0  
At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containi...    27   4.0  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    26   7.0  
At1g53050.1 68414.m06007 protein kinase family protein contains ...    25   9.3  

>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
           domain-containing protein contains Pfam profiles
           PF00612: IQ calmodulin-binding motif, PF02179: BAG
           (Apoptosis regulator Bcl-2 protein) domain
          Length = 1043

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 158 HRPMQGYPSSCFSHPPLPEAHQ 223
           H P   Y  SC+ HPP P  +Q
Sbjct: 73  HPPHASYAPSCYVHPPFPVGYQ 94


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 147 NHYRTDLCKATLRRASAILRSQR 215
           N+YR DL KA L R SAI +  R
Sbjct: 108 NYYRPDLKKAALARLSAISKGLR 130


>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 147 NHYRTDLCKATLRRASAILRSQR 215
           N+YR DL KA L R SAI +  R
Sbjct: 108 NYYRPDLKKAALARLSAISKGLR 130


>At1g69523.1 68414.m07991 UbiE/COQ5 methyltransferase family protein
           low similarity to SP|Q05197 Phosphatidylethanolamine
           N-methyltransferase (EC 2.1.1.17) [Rhodopseudomonas
           sphaeroides] {Rhodobacter sphaeroides}; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 300

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 175 LPFVVLQPSSAPRGPSKQKRLRQPQP 252
           +PF+ + PS A       KRLR P+P
Sbjct: 63  MPFLPISPSHASTSTEDLKRLRPPKP 88


>At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 302

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 149 PLPHRPMQGYPSS-CFSHPPLPEAHQSKK 232
           PLP+RP++G  SS     PP  +AH   K
Sbjct: 48  PLPNRPLRGERSSNSHREPPARQAHNLGK 76


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 196 PSSAPRGPSKQKRLRQPQPSR 258
           P  +P+  S +K++R PQPSR
Sbjct: 249 PIHSPQPRSPRKQIRSPQPSR 269


>At1g53050.1 68414.m06007 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 694

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 161 RPMQGYPSSCFSHPPLPEAHQSKKG*DSRNQVG 259
           RP+   PSS   +PP  E     +  +SR QVG
Sbjct: 421 RPLPCDPSSLPKYPPSKELDARMRDEESRRQVG 453


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,037,187
Number of Sequences: 28952
Number of extensions: 108184
Number of successful extensions: 254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)