Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C21
         (370 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   5.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    20   9.2  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 134 LPWLFDTISVSFAVLVMI 81
           L W + TIS++F + V +
Sbjct: 3   LKWYYITISMAFIIFVSL 20


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 66   SKN-HTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKE 182
            +KN + N+N   + HRN +      +      H +K F+E
Sbjct: 1492 AKNEYGNNNVVARNHRNSVASSIPAKDVFENGHVNKAFEE 1531


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 66   SKN-HTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKE 182
            +KN + N+N   + HRN +      +      H +K F+E
Sbjct: 1492 AKNEYGNNNVVARNHRNSVASSIPAKDVFENGHVNKAFEE 1531


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 66   SKN-HTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKE 182
            +KN + N+N   + HRN +      +      H +K F+E
Sbjct: 1492 AKNEYGNNNVVARNHRNSVASSIPAKDVFENGHVNKAFEE 1531


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 66   SKN-HTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKE 182
            +KN + N+N   + HRN +      +      H +K F+E
Sbjct: 1492 AKNEYGNNNVVARNHRNSVASSIPAKDVFENGHVNKAFEE 1531


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 101 FAVLVMICMIL*LCHFDEF 45
           +   V IC ++  C F EF
Sbjct: 731 YIATVWICTLMNRCKFSEF 749


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,830
Number of Sequences: 336
Number of extensions: 1254
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)