Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C21
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    66   1e-12
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    26   2.1  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   2.8  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   2.8  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   4.9  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   4.9  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    25   4.9  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   4.9  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   6.5  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   6.5  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    24   6.5  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    24   8.6  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 66.5 bits (155), Expect = 1e-12
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +3

Query: 57  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESKVLQEG*PEA 215
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S     +K  +  K    G  EA
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 45  KLIKMAKS-KNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESKVL 194
           +L+ +A S K H+ +  ++K+++NG KK RK   +S   H     + +++L
Sbjct: 169 RLLDLALSEKTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRML 218


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 30  FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRK 134
           +K+D  +  +AK  +  NHN ++ A +  I +PRK
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPRK 365


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 45  KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAH 161
           +L +  +S   TN +Q  + H N      KT H+   +H
Sbjct: 138 QLTQQQQSLPQTNEHQRARTHSNANNHFTKTHHQGQRSH 176


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
          TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 65 LCHFDEFSIHFESEDRTEA 9
          +CHF+E SI  ES++   A
Sbjct: 1  MCHFNELSIEIESKNLRSA 19


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 88  TKTAKLTEMVSKSQGRPGTN 147
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 87  NQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESKVLQEG 203
           N N   +   +    K RH ++L +  K+  E+KVL +G
Sbjct: 189 NANYPFNPQEVNTLNKHRHSASLQNLYKLLDENKVLMQG 227


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +3

Query: 33  KVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESKVLQEG*PE 212
           + D  + K+     H    ++RKA   GIK   +   E   AHG K   +S       PE
Sbjct: 19  QADETISKLCDRLEHATLFEDRKAAALGIKSFAREFKELVAAHGLKGIIQSLHRDYDDPE 78

Query: 213 ASQATRE 233
             + T E
Sbjct: 79  LLKVTLE 85


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 75  HTNHNQNRKAHRNGIKKPRKTRHES 149
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 99  KAHRNG-IKKPRKTRHESTLAHGSKIFKESKVLQEG 203
           + H  G I KPRK R EST +   +I KES   ++G
Sbjct: 350 EVHLTGEILKPRKKRQEST-SSVHRIGKESSDRKDG 384


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 72  NHTNHNQNRKAHRNGIKKPRKTRHESTLA 158
           +H NH+++RK +   +    +T H   LA
Sbjct: 850 DHINHSKDRKLNTLALSSLLRTNHPDVLA 878


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 111 NGIKKPRKTRHESTLA 158
           NGIK+  KTRH S +A
Sbjct: 38  NGIKRGLKTRHVSMMA 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,383
Number of Sequences: 5004
Number of extensions: 20747
Number of successful extensions: 73
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)