Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C21
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)                      30   0.51 
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.67 
SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)           29   0.89 
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.89 
SB_24918| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.89 
SB_44094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.89 
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)               29   1.2  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_6986| Best HMM Match : Ribosomal_L29e (HMM E-Value=1.6)             29   1.6  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    29   1.6  
SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)             27   3.6  
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)                      27   3.6  
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   4.8  
SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   6.3  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_54637| Best HMM Match : DUF1621 (HMM E-Value=3)                     26   8.3  
SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)                   26   8.3  
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)                   26   8.3  
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  
SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  

>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
          Length = 622

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 48  LIKMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHESTLAHGSKI 173
           LI   KSK+H NHN+  + H  + I K     H+ T+A   K+
Sbjct: 571 LIVYCKSKHHANHNKGCERHFEDDINKCGCRNHDHTIAQYYKL 613


>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 46  NSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLRMDPKFLR 180
           NS+ WQ+  I + + K     EM S  + R   N   + DPK +R
Sbjct: 88  NSTSWQNINIHESLAKELARDEMQSNERRRAQANSEQKTDPKGVR 132


>SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)
          Length = 192

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 60  AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKI 173
           +K+ N TN NQ         K P+KT  ++T+   S +
Sbjct: 153 SKNNNQTNRNQGNTGITENTKSPKKTNIDATVPSDSSV 190


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 51  IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESKVLQE 200
           IK     N   HNQ   + +   KK RK RH        +  KE K+L +
Sbjct: 123 IKQTSDNNKPQHNQKNTSKK---KKKRKDRHRKKQDQDPEPLKEKKILTQ 169


>SB_24918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -1

Query: 178 LKILDPCARVDSCLVFLGFLIP 113
           + ++ PCA + SC++FLGF++P
Sbjct: 73  VNLIIPCALI-SCMIFLGFILP 93


>SB_44094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 232 SRVAWLASGY-PSCKTFDSLKILDPCARVDSCLVFLGFLI 116
           +R  WL +   P+ + + S ++LD CAR D  L++L  ++
Sbjct: 67  TRPRWLCTRLTPNTEGYFSTRVLDGCARADHVLLYLSAML 106


>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
          Length = 413

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 54  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 152
           K AKSK   NH ++ K  R   KK ++T  +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 99  KAHRNGIKKPRKTRHES 149
           K HRNGIKKPR  R+ S
Sbjct: 175 KWHRNGIKKPRTNRYPS 191


>SB_6986| Best HMM Match : Ribosomal_L29e (HMM E-Value=1.6)
          Length = 371

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +3

Query: 63  KSKNHTNHNQNRKAHRNGIKKPRKTRH-ESTLAHGSKIFKE 182
           +S N T HN+N++A ++G  + ++ RH ES  A  +KI ++
Sbjct: 216 RSNNVTKHNRNQQA-KDGEPRKKRLRHGESDHAQRAKIIED 255


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +3

Query: 48   LIKMAKSKNHTNHNQNRKAH---RNGIKKPRKTRHESTLAHGSKIFKESKVLQEG*PEAS 218
            L ++A++      N  R+ H   +NG  KP+ T  + TL    K+FK SK  ++   +A 
Sbjct: 2313 LTEVARAGAAAKLNSRRRTHEIDKNG--KPKLTTADFTLVKKKKVFKPSKKKRDPFKDAI 2370

Query: 219  QAT-REGG*EKSYPRSKGQEMNISCK 293
            + T RE   EK     K  + N   K
Sbjct: 2371 EETLREIEEEKRLQEQKKVKDNEEVK 2396


>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
          Length = 535

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +3

Query: 54  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKE 182
           K  K K   +H  N     NG+  P+K + +    H  K F +
Sbjct: 92  KFKKIKKEGDHGNNNTEKPNGVSSPKKKKKKHHHKHEEKHFTD 134


>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
          Length = 1183

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +1

Query: 43   ENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNP 150
            E   +W  +R++ +  +  KL E +  ++GR    P
Sbjct: 1031 EKYREWHMKRVLPLFVQDTKLREKIENAEGRTSGGP 1066


>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 57  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 146
           +  S    +HN  +   R GIK+PR+++ E
Sbjct: 342 LTTSPTMISHNNQQNDSRRGIKRPRRSQEE 371


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 69  KNHTN-HNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESK 188
           +NH   HN+NRK   N I+K    R+    +   +I   S+
Sbjct: 66  RNHKEPHNRNRKEPGNRIRKVEHNRNRKDYSRDERIHNRSR 106


>SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 352

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 45  KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 152
           K IK AK     N+N  RK    G K+P++ R ++T
Sbjct: 86  KPIKKAKVSK-VNNNGRRKEKNRGQKRPKRCRPDTT 120


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 227 SRGRLREKLPEKQRPRNE 280
           SRGR  EK PEKQR +++
Sbjct: 267 SRGRSAEKSPEKQRDKSD 284


>SB_54637| Best HMM Match : DUF1621 (HMM E-Value=3)
          Length = 265

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 57  MAKSKNHT-NHNQNRKAHRNGIKKPRKTRHESTLAH 161
           +   +NH  N N++ KA   G K+P   +H   LA+
Sbjct: 117 LVSCENHKINRNKDHKAFTEGCKEPEGPKHRYFLAN 152


>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
          Length = 294

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 99 CGFGYDLYDSLT 64
          CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52


>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
          Length = 538

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 99 CGFGYDLYDSLT 64
          CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52


>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 100 KLTEMVSKSQGRPGTNPPLRMDPKFLRNQRFC 195
           +++ M++   G P   PP ++DP+ LR   +C
Sbjct: 667 RVSHMLAGEPGVPIGYPPRQLDPELLRYVMYC 698


>SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 48  LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRH 143
           +I + +   H +HN +R  + N IK   + RH
Sbjct: 114 VIGVVRHVRHDDHNLSRSHNNNAIKSRNQNRH 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,105,786
Number of Sequences: 59808
Number of extensions: 158252
Number of successful extensions: 524
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)