Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C21
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    29   0.017
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 29.1 bits (62), Expect = 0.017
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 63  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSK 170
           +  NH NHN N+  H +        +H     H SK
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSK 455


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 61  QSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLRMD 165
           +  ++I I  +  K+  +V + + +PG   PL+ D
Sbjct: 30  KGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCD 64


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 90  QNRKAHRNGIKKPRKTRHESTLAHGSKIFKE 182
           Q ++ H NG   P  T      +  SKI ++
Sbjct: 123 QQQQQHNNGYASPMSTSSYDPYSPNSKIGRD 153


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 135 TRHESTLAHGSKIFKESKVLQE 200
           T H        ++ KE+K++QE
Sbjct: 427 TEHSQLTNISEEVLKEAKIIQE 448


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 48  LIKMAKSKNHTNHNQNRKAHRN 113
           LI   +  N  N N N+  H N
Sbjct: 577 LIMNTRCANSDNQNNNQNKHNN 598


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 135 TRHESTLAHGSKIFKESKVLQE 200
           T H        ++ KE+K++QE
Sbjct: 133 TEHSQLTNISEEVLKEAKIIQE 154


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 171 FWIHAQGWIRAWSSL 127
           +W H  GW+   SS+
Sbjct: 526 WWSHVLGWLCGLSSM 540


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 171 FWIHAQGWIRAWSSL 127
           +W H  GW+   SS+
Sbjct: 579 WWSHVLGWLCGLSSM 593


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,263
Number of Sequences: 438
Number of extensions: 1584
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)