Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C21
(370 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi... 59 1e-09
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi... 58 1e-09
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A... 33 0.078
At3g25950.1 68416.m03234 hypothetical protein 28 2.2
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 27 5.2
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 27 5.2
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ... 27 5.2
At5g39360.1 68418.m04768 circadian clock coupling factor-related... 26 6.8
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 26 6.8
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 26 6.8
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi... 26 6.8
>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
to 60S ribosomal protein L29 GB:P25886 from (Rattus
norvegicus)
Length = 83
Score = 58.8 bits (136), Expect = 1e-09
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +3
Query: 54 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESK 188
+MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T K + +
Sbjct: 22 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQR 66
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 91 KTAKLTEMVSKSQGRPGTNPPLRMDPKFLRNQRFCKKGNLK 213
++AK + K R P MDPKFLRNQR+ +K N+K
Sbjct: 34 QSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74
>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
to ribosomal protein L29 GI:7959366 [Panax ginseng]
Length = 61
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +3
Query: 57 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKESK 188
MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T K + +
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQR 44
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 91 KTAKLTEMVSKSQGRPGTNPPLRMDPKFLRNQRFCKKGNLK 213
++AK + K R P MDPKFLRNQR+ +K N+K
Sbjct: 12 QSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52
>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
Arabidopsis thaliana, AJ011845
Length = 400
Score = 32.7 bits (71), Expect = 0.078
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 69 KNHTNHNQNRKAHRNGIKKPRKTRHESTLAH 161
KNHT H++ R ++ G K RKT +T H
Sbjct: 88 KNHTFHHKMRMSYSEGSKMKRKTHRNTTFGH 118
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 170 FGSMRKGGFVPGLPWLFDTISVSFAVLVMICMIL 69
+GS G VP WL + + FA+LV I +L
Sbjct: 201 YGSGAADGVVPRWAWLSWLVVIGFAILVSILWVL 234
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 48 LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKE 182
L+ K + +HN +A +G+K K E AH K+ +E
Sbjct: 104 LLDQIKLEFEAHHNSINQAGSDGVKAESKDDDEELSAHRQKMLEE 148
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 48 LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFKE 182
L+ K + +HN +A +G+K K E AH K+ +E
Sbjct: 104 LLDQIKLEFEAHHNSINQAGSDGVKAESKDDDEELSAHRQKMLEE 148
>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
(GI:1658504) [Drosophila melanogaster]
Length = 444
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 106 TEMVSKSQGRPGTNPPLRMDPKFLRNQRFCKKGNLKPAKQ 225
TE + K+ G P +N P ++DP+F Q + K N P Q
Sbjct: 375 TENLHKTFGSPWSNEPSKVDPEFSVPQCYYAK-NPPPLHQ 413
>At5g39360.1 68418.m04768 circadian clock coupling factor-related
similar to circadian clock coupling factor ZGT
[Nicotiana tabacum] GI:14210079
Length = 249
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 202 PSCKTFDSLKILDPCARVD 146
P C+T D L + DPC +D
Sbjct: 132 PQCRTDDILYVSDPCEHLD 150
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 117 YHFCELCGFGYDLYDSLTLP 58
YH CE CGF DLY ++ P
Sbjct: 65 YH-CETCGFDVDLYCAMYPP 83
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 117 YHFCELCGFGYDLYDSLTLPF**VFNP 37
++ C +CGF DL +LTLP + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208
>At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR repeats Pfam Profile:
PF01535
Length = 426
Score = 26.2 bits (55), Expect = 6.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 117 YHFCELCGFGYDLY 76
+H E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,437,140
Number of Sequences: 28952
Number of extensions: 112500
Number of successful extensions: 378
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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