Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C19
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC061890-1|AAH61890.1|  110|Homo sapiens ribosomal protein L35a ...   163   5e-40
BC017093-1|AAH17093.1|  110|Homo sapiens RPL35A protein protein.      163   5e-40
BC010949-1|AAH10949.1|  110|Homo sapiens ribosomal protein L35a ...   163   5e-40
BC001037-1|AAH01037.1|  110|Homo sapiens ribosomal protein L35a ...   163   5e-40
AY871273-1|AAX11429.1|  110|Homo sapiens cell growth-inhibiting ...   163   5e-40
X52966-1|CAA37138.1|  110|Homo sapiens protein ( Human mRNA for ...   160   3e-39
AL365223-3|CAI15713.1|   96|Homo sapiens ribosomal protein L35a ...   118   2e-26
X94619-1|CAA64325.1|   21|Homo sapiens ribosomal protein L35a pr...    38   0.024
AK126039-1|BAC86408.1|  214|Homo sapiens protein ( Homo sapiens ...    30   6.3  
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.                 30   8.3  

>BC061890-1|AAH61890.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  163 bits (396), Expect = 5e-40
 Identities = 76/111 (68%), Positives = 87/111 (78%)
 Frame = +2

Query: 224 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 403
           GRL++KA+F GYKRGLRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 404 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
             GK  K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>BC017093-1|AAH17093.1|  110|Homo sapiens RPL35A protein protein.
          Length = 110

 Score =  163 bits (396), Expect = 5e-40
 Identities = 76/111 (68%), Positives = 87/111 (78%)
 Frame = +2

Query: 224 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 403
           GRL++KA+F GYKRGLRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 404 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
             GK  K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>BC010949-1|AAH10949.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  163 bits (396), Expect = 5e-40
 Identities = 76/111 (68%), Positives = 87/111 (78%)
 Frame = +2

Query: 224 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 403
           GRL++KA+F GYKRGLRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 404 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
             GK  K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>BC001037-1|AAH01037.1|  110|Homo sapiens ribosomal protein L35a
           protein.
          Length = 110

 Score =  163 bits (396), Expect = 5e-40
 Identities = 76/111 (68%), Positives = 87/111 (78%)
 Frame = +2

Query: 224 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 403
           GRL++KA+F GYKRGLRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 404 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
             GK  K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>AY871273-1|AAX11429.1|  110|Homo sapiens cell growth-inhibiting
           protein 33 protein.
          Length = 110

 Score =  163 bits (396), Expect = 5e-40
 Identities = 76/111 (68%), Positives = 87/111 (78%)
 Frame = +2

Query: 224 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 403
           GRL++KA+F GYKRGLRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 404 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
             GK  K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110


>X52966-1|CAA37138.1|  110|Homo sapiens protein ( Human mRNA for
           ribosomal protein L35a. ).
          Length = 110

 Score =  160 bits (389), Expect = 3e-39
 Identities = 75/111 (67%), Positives = 86/111 (77%)
 Frame = +2

Query: 224 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 403
           GRL++KA+F GYKRGLRNQ E+TALLK+EG   R++  FY GK C YVY+AK  T  PG 
Sbjct: 3   GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61

Query: 404 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
             GK  K R IWGKVTR HGNSG V AKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 62  --GKPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPAKAIGHRIRVMLYPSRI 110


>AL365223-3|CAI15713.1|   96|Homo sapiens ribosomal protein L35a
           pseudogene 3 protein.
          Length = 96

 Score =  118 bits (284), Expect = 2e-26
 Identities = 57/97 (58%), Positives = 68/97 (70%)
 Frame = +2

Query: 224 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 403
           GRL++K+ F GYKR L+NQ E+TALLK+EG   +++  FY GK C  VY+AK  T IPG 
Sbjct: 2   GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG- 60

Query: 404 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 514
              K  K R IWGKVTR H NSG V AKF SNLPA+A
Sbjct: 61  --SKPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPAKA 95


>X94619-1|CAA64325.1|   21|Homo sapiens ribosomal protein L35a
           protein.
          Length = 21

 Score = 38.3 bits (85), Expect = 0.024
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +2

Query: 224 GRLYAKAVFTGYKRGLRNQ 280
           GRL++KA+F GYKRGLRNQ
Sbjct: 3   GRLWSKAIFAGYKRGLRNQ 21


>AK126039-1|BAC86408.1|  214|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44051 fis, clone TESTI4033433. ).
          Length = 214

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 476 HCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSS*LCTHRRNACQ 345
           HC  C  GG P P+ H AW      +    S +    HRR+ CQ
Sbjct: 136 HCSHCP-GGQPGPQLHRAWTVWSWAVPSSASRACGDGHRRSTCQ 178


>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
          Length = 1618

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 451  GHLAPDSTQLGFF-ATGTSGNWCPLLSSVH 365
            G   PDST LGF+  + TS  W PL S  H
Sbjct: 1291 GETLPDSTPLGFYLRSPTSPRWTPLESRGH 1320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,418,709
Number of Sequences: 237096
Number of extensions: 1877082
Number of successful extensions: 13062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13055
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)