Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C19
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 148 4e-36
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 30 1.6
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 30 1.6
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 29 2.2
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 29 2.2
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 29 2.2
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 8.8
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 8.8
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 148 bits (358), Expect = 4e-36
Identities = 70/121 (57%), Positives = 88/121 (72%)
Frame = +2
Query: 194 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYR 373
V R+ S P GRLY KA+FTG+KRGLR Q E+T+LLK+EG ++ DA FYAGK VY+Y+
Sbjct: 6 VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65
Query: 374 AKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSR 553
A +T G T+ RAIWGK+TRPHGN+G+VRAKF N+P A+G IRV+LYPS
Sbjct: 66 AHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSN 123
Query: 554 I 556
I
Sbjct: 124 I 124
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 496 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 341
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA +
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 496 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 341
++ L T + W GHLA ++ Q+ A + NW ++ + DA+LA +
Sbjct: 950 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 275 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 424
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 275 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 424
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 275 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 424
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 275 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 424
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 275 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 424
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 275 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 424
N E KVE AKD+ KHCV ++A+ P+ P K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 555 ILEGYSITRIXCPIAWAGRLDLNLARTLPELP 460
+L+G S+ RI AW +D+ + T P P
Sbjct: 38 VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +3
Query: 207 HQSPATAGCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 386
H SP+T+ T S S +TST TP + + T S +S + T +
Sbjct: 94 HSSPSTSTSTSTSTSTSTSTSRSTSTVTPTT---RSSTTTTATSTPTSSSKATTTSAQIT 150
Query: 387 HQFPEVPVAKKPSCVLSGAR*P 452
PE+P A P VL G P
Sbjct: 151 Q--PEIPQA-APGTVLKGEEFP 169
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 246 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 386
+S D+ +V+A S L+ RL TV +Q ++ SIAS + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 246 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 386
+S D+ +V+A S L+ RL TV +Q ++ SIAS + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,325,074
Number of Sequences: 27780
Number of extensions: 245100
Number of successful extensions: 546
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -