Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C19
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si... 111 4e-25
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si... 111 4e-25
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id... 109 1e-24
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri... 109 2e-24
At5g53660.1 68418.m06665 expressed protein 31 0.88
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ... 29 2.0
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 28 6.2
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot... 27 8.2
>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
similar to ribosomal protein L33B GB:NP_014877 from
[Saccharomyces cerevisiae]
Length = 112
Score = 111 bits (267), Expect = 4e-25
Identities = 52/110 (47%), Positives = 69/110 (62%)
Frame = +2
Query: 227 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 406
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK------ 64
Query: 407 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
+ R IWGKVTRPHGNSG VRAKF SNLP ++MG +RV +YPS I
Sbjct: 65 --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
similar to ribosomal protein L35a GI:57118 from [Rattus
norvegicus]
Length = 112
Score = 111 bits (267), Expect = 4e-25
Identities = 53/110 (48%), Positives = 68/110 (61%)
Frame = +2
Query: 227 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 406
RLY + GYKR NQ+ NT+L++VEG + +Y GK Y+Y+AK +
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK------ 64
Query: 407 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
+ R IWGKVTRPHGNSG VRAKF SNLP ++MG +RV +YPS I
Sbjct: 65 --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
identical to GB:CAB81600 from [Arabidopsis thaliana]
Length = 111
Score = 109 bits (263), Expect = 1e-24
Identities = 51/110 (46%), Positives = 69/110 (62%)
Frame = +2
Query: 227 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 406
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63
Query: 407 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
+ R IWGKVTRPHGNSG VR+KF SNLP ++MG +RV +YPS I
Sbjct: 64 --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
PIR:S44069
Length = 111
Score = 109 bits (262), Expect = 2e-24
Identities = 51/110 (46%), Positives = 69/110 (62%)
Frame = +2
Query: 227 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 406
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63
Query: 407 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 556
+ R IWGKVTRPHGNSG VR+KF SNLP ++MG +RV +YPS I
Sbjct: 64 --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>At5g53660.1 68418.m06665 expressed protein
Length = 365
Score = 30.7 bits (66), Expect = 0.88
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 407 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIR-VMLYPSRI*XPSANYKN 583
RG+ + + +RP+ N GSV+ + LP + I+ L P + +NY++
Sbjct: 140 RGRPRSRKHVEPPYSRPNNNGGSVKNRDLKKLPQKLSSSSIKDKTLEPMEVSSSISNYRD 199
Query: 584 KNKIQKKTNSVSLTSQFNK 640
+K T ++ T Q NK
Sbjct: 200 SRGSEKFT-VLATTEQENK 217
>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
PF04424: Protein of unknown function (DUF544)
Length = 682
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +2
Query: 308 EGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAK 487
EG K+R VF+ H +++ + + +G + +W K+ +G++ + A
Sbjct: 508 EGLKERELCVFFRNNHFCTMFKYEGELYLLATDQGYLNQPDLVWEKLNEVNGDTAFMTAT 567
Query: 488 FK 493
FK
Sbjct: 568 FK 569
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 538 HHSYXVS-HSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 371
H S +S +LGRE L +G D G + P+ST+L + A+ ++ C ++S
Sbjct: 304 HQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360
>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
similar to early nodulin ENOD8 [Medicago sativa]
GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
carota] GI:1911765, lanatoside 15'-O-acetylesterase
[Digitalis lanata] GI:3688284; contains InterPro Entry
IPR001087 Lipolytic enzyme, G-D-S-L family
Length = 379
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 481 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 386
SDT ++ G L S ++ FF + TSG +C
Sbjct: 45 SDTGELSSGLGFLPQPSYEITFFRSPTSGRFC 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,852,498
Number of Sequences: 28952
Number of extensions: 233985
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -