Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C17
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    59   6e-10
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    33   0.036
SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyce...    27   1.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   5.5  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   5.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   7.2  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   9.5  

>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 23/73 (31%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = +3

Query: 438 STDKGLTFLEMKYQMLLSYLINLTYIVLRKCSGER-IESDPSIDRLIEIRTVLEKIRPID 614
           S+  G++ + +K Q+LLSY+  L +++L K   E  ++    +++L+++R  +EKIRP++
Sbjct: 21  SSSDGVSLVSLKCQLLLSYVQKLAFLMLVKLDDESFLQHQDVVEKLVQLRIEIEKIRPLE 80

Query: 615 SKLKYQIDKLVKS 653
           ++++Y +DKL+++
Sbjct: 81  NRIQYSVDKLLRA 93


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
 Frame = +3

Query: 396 LVDNMLVRVKNGELSTDKGLTFLEMKYQML-----LSYLINLTYIVLRKCSGERIESDPS 560
           L DN++VR++N  L   K LT+L++ +  +     +++L  L  +   +    RIE+   
Sbjct: 89  LYDNLIVRIEN--LDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEG 146

Query: 561 IDRLIEIRTVLEKIRPIDS 617
           +DRL  +     KIR I++
Sbjct: 147 LDRLTNLELGGNKIRVIEN 165


>SPBC28F2.04c |cwf7|spf27|splicing factor Cwf7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 187

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +3

Query: 402 DNMLVRVKNGELSTDKGLTFLEMKYQMLLSYLINLTYIVLRKCSGER 542
           DN+ +  K+GE + D  L  LE++ ++L   L+N T  + + C+ +R
Sbjct: 107 DNLYLLEKHGEKAFDSSLEALEVQLELLEKELVN-TKKLSQGCNRKR 152


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +3

Query: 243 FQKFYPISIINYRSTILINMVQACEETEQPNIPQAMKLLKEMNVNVQQVSQLVDNMLVRV 422
           F  F   SI   +S+I  +  +    + + N  +        ++N  QVS  VDN L+++
Sbjct: 393 FPNFNEGSIAEMKSSIYESSQEGIRSSSENNKKEDDLKDSTGDLNTTQVSSRVDNFLLKL 452

Query: 423 KNG---ELSTDKGLTFLEMKYQMLLSYLINLTYIVLRKCS 533
            +    EL+ +  L F ++  +   + LI     + R  S
Sbjct: 453 PSMVSLELTNEMALEFYDLNTKASRNRLIKALCTIPRTSS 492


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 615 NQLDESFQVLFLFQ*AYQWKDQIQ-FFHQSTSLILYRSNLS 496
           N+L     ++  F+  + W +  Q FF  S SLIL+  NL+
Sbjct: 353 NKLFREILIMDDFRFMHYWNNLCQSFFENSRSLILHEKNLT 393


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/80 (22%), Positives = 38/80 (47%)
 Frame = +3

Query: 264  SIINYRSTILINMVQACEETEQPNIPQAMKLLKEMNVNVQQVSQLVDNMLVRVKNGELST 443
            SI++   T  ++   +C++  +  IP+ + L K+M +   Q    +  ++V+ +      
Sbjct: 1118 SILSLIDTEALSRYYSCQQKVEDTIPRDVVLEKKMAL---QRDAFIRALVVKCETFSTQG 1174

Query: 444  DKGLTFLEMKYQMLLSYLIN 503
             K        YQ+LL++L N
Sbjct: 1175 HKDKDNYFQNYQLLLNWLEN 1194


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 261 WDKTFEMNR*NFGKVLTAKLGCMLFLDSYLSCHFEMKVLEQLLQI 127
           WD    + +   G+V  + L C   L S  S  F+M +L  LL++
Sbjct: 257 WDPGMGVIKGYKGRVDRSGLDCSTLLASLYSNEFDMHILPTLLKL 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,216
Number of Sequences: 5004
Number of extensions: 47843
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)