Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C17
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1757 - 39678181-39678325,39678472-39678626,39678731-396788...    90   2e-18
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    27   9.9  

>01_06_1757 -
           39678181-39678325,39678472-39678626,39678731-39678898,
           39679532-39679723,39679821-39680000,39680099-39680266
          Length = 335

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 44/105 (41%), Positives = 64/105 (60%)
 Frame = +3

Query: 339 PQAMKLLKEMNVNVQQVSQLVDNMLVRVKNGELSTDKGLTFLEMKYQMLLSYLINLTYIV 518
           P+ +  LKEM   +  V+  V  +  +VK  +L T  G+ +LE K+ +LLSY  ++ Y +
Sbjct: 30  PKLLAALKEMKEGLDLVTGKVKALTRKVKKNQLPTADGIGYLEAKHHLLLSYCQDIVYYL 89

Query: 519 LRKCSGERIESDPSIDRLIEIRTVLEKIRPIDSKLKYQIDKLVKS 653
           LRK  G  +E  P +  L+EIR  LEKIRPID K++YQI KL  +
Sbjct: 90  LRKAKGLSVEGHPVVRSLVEIRLFLEKIRPIDKKMEYQIQKLTNA 134


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 261 ISIINYRSTIL-INMVQACEETEQPNIPQAMKLLKEMNVN 377
           I  +   STI  +N    C  ++QPN  +A++LLK M VN
Sbjct: 556 IGALRIVSTIADVNASMNCSSSQQPNYDEALELLK-MAVN 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,516
Number of Sequences: 37544
Number of extensions: 241025
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)