Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C17
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35)            53   2e-07
SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)               49   4e-06
SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25)             36   0.022
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 28   5.8  

>SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35)
          Length = 430

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 19/67 (28%), Positives = 45/67 (67%)
 Frame = +3

Query: 447 KGLTFLEMKYQMLLSYLINLTYIVLRKCSGERIESDPSIDRLIEIRTVLEKIRPIDSKLK 626
           +G  ++E+K+++ L+Y IN+ + +  K     ++  P I R++++RT+++++ P DS+L+
Sbjct: 187 EGAKYIELKHKLYLTYCINIAFYLRLKAQQASVKDHPVIARIVQLRTLIKELEPTDSRLE 246

Query: 627 YQIDKLV 647
             I+ L+
Sbjct: 247 EDIETLL 253


>SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)
          Length = 828

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
 Frame = +3

Query: 471 KYQMLLSYLINLT-YIVLRKCSGERIESDPSID------RLIEIRT-VLEKIRPIDSKLK 626
           KY MLL  L N+  Y +L+  +  R  S+ S +      +L+ + + VLEK+RPID K+K
Sbjct: 571 KYAMLLQMLPNMVAYYMLQDFASNRSHSNNSDECKFNSSKLVHLCSQVLEKLRPIDQKMK 630

Query: 627 YQIDKLVK 650
           YQIDKLVK
Sbjct: 631 YQIDKLVK 638


>SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25)
          Length = 1034

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
 Frame = +3

Query: 228  NFTCSFQKFYPISIINY-RSTILINMVQACEETEQPNI-PQAMKLLKEMNVNVQQVSQLV 401
            N TC   K   + I+ Y R      +++   + ++  +  QA ++LKE    + ++S ++
Sbjct: 704  NLTCEEVKCAEVEIVKYIRRQEFGEIIEFLNKVKRNGVRDQAKRVLKETGP-IHKLSPVL 762

Query: 402  DNMLVRVKNGELSTDKGLTFLEMKYQMLLSYLINLTYIVLRKC 530
            D  L+RV  G L  ++     + K+QM+L    ++T I+LR+C
Sbjct: 763  DGGLLRV-GGRL--ERAPVGYKFKHQMILPRKHHVTEIILREC 802


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 276 YRSTILINMVQACEETEQPNIPQAMKLLKEMNVNVQQVSQLVDNMLVRVKN--GELSTDK 449
           Y +T L N     EE E     +  KLL++++ N +++ +L DN+L R+ +  G L  D+
Sbjct: 362 YVTTKLPNPAYTPEELES----ERTKLLEDVSSNKRKMKELEDNLLYRLTSTQGSLVDDE 417

Query: 450 GL 455
            L
Sbjct: 418 SL 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,619
Number of Sequences: 59808
Number of extensions: 313844
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)