Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C17
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.9  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 339 PQAMKLLKEMNVNVQQVSQLV-DNMLVRVKNGELSTDKGLTFLEMKYQMLLS 491
           PQ +K + E+ ++   V QLV D   +  +N  L   K L     KY+ + S
Sbjct: 81  PQGIKAVMELLIDENSVKQLVSDCSTISEENPHLKASK-LVQCVSKYKTMKS 131


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 202 RMYVIFGFISFMSLRNESIGTVITN 128
           RM+    F+  + LRN SI  + +N
Sbjct: 353 RMFKDLFFLQILDLRNNSIDRIESN 377


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 447  KGLTFLEMKYQMLLSYLIN 503
            +GL F++ K Q+L  YL++
Sbjct: 957  RGLVFVKGKGQLLTHYLVS 975


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,602
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)