Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C17
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07840.2 68414.m00851 leucine zipper factor-related similar t...    87   7e-18
At1g07840.1 68414.m00850 leucine zipper factor-related similar t...    87   7e-18
At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family...    70   2e-12
At4g21180.1 68417.m03063 DNAJ heat shock N-terminal domain-conta...    28   4.7  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    28   6.2  

>At1g07840.2 68414.m00851 leucine zipper factor-related similar to
           charged amino acid rich leucine zipper factor-1
           (GI:12061569) {Mus musculus}
          Length = 312

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 45/102 (44%), Positives = 61/102 (59%)
 Frame = +3

Query: 339 PQAMKLLKEMNVNVQQVSQLVDNMLVRVKNGELSTDKGLTFLEMKYQMLLSYLINLTYIV 518
           PQ   +L+EM   +  V   V+ +   VK     T  G+++LE K+ +LLSY  +L Y +
Sbjct: 18  PQLASVLREMKNVLDVVRSKVEALTALVKANSFPTAGGISYLEAKHLLLLSYCQDLVYYI 77

Query: 519 LRKCSGERIESDPSIDRLIEIRTVLEKIRPIDSKLKYQIDKL 644
           LRK  G  I+  P +  L+EIR  LEKIRPID KL+YQI KL
Sbjct: 78  LRKAKGLSIDGHPLVRSLVEIRMFLEKIRPIDKKLQYQIQKL 119


>At1g07840.1 68414.m00850 leucine zipper factor-related similar to
           charged amino acid rich leucine zipper factor-1
           (GI:12061569) {Mus musculus}
          Length = 312

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 45/102 (44%), Positives = 61/102 (59%)
 Frame = +3

Query: 339 PQAMKLLKEMNVNVQQVSQLVDNMLVRVKNGELSTDKGLTFLEMKYQMLLSYLINLTYIV 518
           PQ   +L+EM   +  V   V+ +   VK     T  G+++LE K+ +LLSY  +L Y +
Sbjct: 18  PQLASVLREMKNVLDVVRSKVEALTALVKANSFPTAGGISYLEAKHLLLLSYCQDLVYYI 77

Query: 519 LRKCSGERIESDPSIDRLIEIRTVLEKIRPIDSKLKYQIDKL 644
           LRK  G  I+  P +  L+EIR  LEKIRPID KL+YQI KL
Sbjct: 78  LRKAKGLSIDGHPLVRSLVEIRMFLEKIRPIDKKLQYQIQKL 119


>At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family
           protein contains Pfam profile PF04000: Sas10/Utp3
           family; contains Prosite PS00761: Signal peptidases I
           signature 3; weak similarity to PEBP2 beta-binding
           protein / charged amino acid rich leucine zipper
           factor-1 (GI:12061569) [Mus musculus]
          Length = 654

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/95 (32%), Positives = 63/95 (66%)
 Frame = +3

Query: 339 PQAMKLLKEMNVNVQQVSQLVDNMLVRVKNGELSTDKGLTFLEMKYQMLLSYLINLTYIV 518
           P+ + LL E+N  V+++   ++ ++ ++K GE+S +    +LE+K  +LL+Y  ++T+ +
Sbjct: 237 PEIVGLLSELNDAVEELESKINPVMNKLKEGEISLNGLARYLEVKQLLLLTYCQSITFYL 296

Query: 519 LRKCSGERIESDPSIDRLIEIRTVLEKIRPIDSKL 623
           L K  G+ I   P + RL+EI+++L+KI+ +D +L
Sbjct: 297 LLKSEGQPIRDHPVLARLVEIKSLLDKIKELDEEL 331


>At4g21180.1 68417.m03063 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +3

Query: 240 SFQKFYPISIINYRSTILINMVQACEETEQPNIPQAMKLLKEMNVNV 380
           SFQKF  +S+   RS +L  +V +  ET+  +I + ++++  + +NV
Sbjct: 408 SFQKFQELSLAE-RSKLLREVV-SLSETDVQDIEKVLEMIPSLKINV 452


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
 Frame = +3

Query: 381 QQVSQLVDNMLVRVKNGELSTDKGLTFLEMKYQMLLSYL-INLTYI--VLRKCSGERIES 551
           Q++ QL +N+   + +   S DK     E KY+     L I LT +  +  +  G +   
Sbjct: 392 QEIQQLNENLDRALDDVNKSKDKVADLTE-KYEDSKRMLDIELTTVKNLRHELEGTKKTL 450

Query: 552 DPSIDRLIEIRTVLEKIRPIDSKLKYQI 635
             S DR+ ++ T+L++ R + SKL+ ++
Sbjct: 451 QASRDRVSDLETMLDESRALCSKLESEL 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,000
Number of Sequences: 28952
Number of extensions: 223296
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)