Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C15
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    53   3e-08
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    41   2e-04
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    31   0.15 
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   3.1  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   5.5  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   5.5  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   7.3  

>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
 Frame = +1

Query: 205 MTIYNLYIFDRYGTLLYYGEWNRSKQSGM----------SIEEE-GKLMYGMLFSIKSFV 351
           MTIY  YI+ R    ++   W  S ++ M          SIE++  KL++G++FS+++ V
Sbjct: 1   MTIYAFYIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMV 60

Query: 352 SKISPLDPKDGFSHYKTSKYTLHCLETPS 438
            KI+    +D F  Y TSKY LH  ETP+
Sbjct: 61  KKITA--DQDQFMSYTTSKYKLHFYETPT 87



 Score = 31.1 bits (67), Expect = 0.15
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = +2

Query: 434 PQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPL 547
           P  L+ +  T+ +   +  +L++IY  +YV++++++PL
Sbjct: 86  PTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPL 123


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +2

Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFI 607
           G+KFV+ T+ +    R  L+K Y E+Y  Y+++NP   +  PI   LF  +L  +I
Sbjct: 75  GMKFVLFTEKKTTNARLQLQKFY-ELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYI 129


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +1

Query: 262 EWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 441
           +W+ S      +  +G LM  + F    F  K+  +   D  S++ +S+   H  +  + 
Sbjct: 335 QWSTSGFELYGVSLDGNLML-LQFEESEFGEKMDTIHYPDDLSYFNSSRSKAHVNKNAAA 393

Query: 442 PEVCDEYRQPSTGRPRSPKKDL 507
               D    P+ G+P SP K +
Sbjct: 394 ----DRTTSPTQGQPESPSKSI 411


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 355 KISPLDPKDGFSHYKTSKYTLHCLETPSGPEVCDEYRQPSTGRP 486
           K+ P+    GF +Y   K+ L   +       C++Y   + GRP
Sbjct: 31  KVPPVSLSQGFFNYNPPKFVLDAAKKSIDEVACNQYSH-TRGRP 73


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 78  FTFCYYIICILEGEYRL 28
           FTFC +II +L G Y L
Sbjct: 587 FTFCEHIIILLYGRYEL 603


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 334 SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGPEVCDEYR 465
           S++S++  IS  DPK  F H     ++ + L    G  +  + R
Sbjct: 471 SVESWLLDISDEDPKFAFVHQWNDAFSFYILNASDGSVISQKSR 514


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 73  CEI*IIH*VEYIDVIVLIIRAYLFYE 150
           CE+ + H VEY DV  ++ RA +  E
Sbjct: 77  CEVLLSHTVEYADVEAILNRALIIAE 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,724
Number of Sequences: 5004
Number of extensions: 59008
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)