Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C15
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333... 61 9e-10
07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024 42 4e-04
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263... 41 8e-04
01_06_0085 + 26289952-26290333,26290439-26290551,26291284-26291865 30 1.4
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 28 7.5
11_08_0060 + 28108548-28109402 27 9.9
>01_05_0102 -
18131640-18131655,18132928-18133046,18133186-18133300,
18134072-18134325
Length = 167
Score = 60.9 bits (141), Expect = 9e-10
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 13/109 (11%)
Frame = +1
Query: 220 LYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKIS-----------P 366
LY+F+R G L Y EW+R ++ + ++ KLM+G+LFS++SF +KI P
Sbjct: 36 LYVFNRGGVCLLYREWHRPLRT-LDPTQDQKLMFGLLFSLRSFTAKIDPTTAEKGNLGVP 94
Query: 367 LDPKDGFSHY--KTSKYTLHCLETPSGPEVCDEYRQPSTGRPRSPKKDL 507
L P G S Y KT+ Y L+ LE+PSG ++ P TG R K +
Sbjct: 95 LLPGQGCSFYSFKTNTYKLNFLESPSGIKLI-LITHPRTGDQRDTLKHI 142
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 434 PQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPI 568
P G+K ++ T + RD LK IY +YV+Y+++NPL G PI
Sbjct: 119 PSGIKLILITHPRTGDQRDTLKHIY-NLYVEYVVKNPLYAPGTPI 162
>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
Length = 143
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +2
Query: 392 IIKLQNTPFTAWRHPQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 571
+++ N ++ G KF + AQ + LLK IY E+Y ++++NP EM PI
Sbjct: 63 LLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIY-ELYTDFVLKNPFYEMEMPIR 121
Query: 572 SDLFKSKLXLFIKQ 613
+LF L I++
Sbjct: 122 CELFDLNLAQVIQK 135
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/77 (22%), Positives = 39/77 (50%)
Frame = +1
Query: 211 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 390
IY+L+I ++ G L+YY ++ +G + + + + S+ + ++SP +G
Sbjct: 6 IYSLFIINKSGGLIYYKDYG---SAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEGID 62
Query: 391 HYKTSKYTLHCLETPSG 441
+ + LHC ++ +G
Sbjct: 63 LLQAHNFDLHCFQSLTG 79
>06_01_0367 -
2636487-2636498,2636655-2636724,2636831-2636937,
2637208-2637226,2637383-2637470,2638175-2638303,
2638428-2638506,2639658-2639720,2640437-2640535,
2641583-2641740,2642926-2643094,2643174-2643239
Length = 352
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +2
Query: 392 IIKLQNTPFTAWRHPQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 571
+++ N ++ G KF + AQ + LLK IY E+Y ++++NP EM PI
Sbjct: 63 LLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIY-ELYTDFVLKNPFYEMEMPIR 121
Query: 572 SDLFKSKL 595
+LF L
Sbjct: 122 CELFDLNL 129
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/77 (22%), Positives = 39/77 (50%)
Frame = +1
Query: 211 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 390
IY+L+I ++ G L+YY ++ +G + + + + S+ + ++SP +G
Sbjct: 6 IYSLFIINKSGGLIYYKDYG---SAGRTDTNDSLRLASLWHSMHAISQQLSPTHGCEGID 62
Query: 391 HYKTSKYTLHCLETPSG 441
+ + LHC ++ +G
Sbjct: 63 LLQAHNFDLHCFQSLTG 79
>01_06_0085 + 26289952-26290333,26290439-26290551,26291284-26291865
Length = 358
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 232 DRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDP 375
D ++ YGE +++ +G++ E + LFS K F+S++ +P
Sbjct: 33 DLRNNIINYGELSQAAYTGLNRERRSRYAGSCLFSRKDFLSRVDVSNP 80
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 223 YIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYK 399
++ D +GTL YYG N+ + G + ++ G +FS F+++ +P + S +K
Sbjct: 204 FVLDSHGTLFYYG--NKGQSQGAASQQTAGEGTG-VFSRFRFLNQKAPTQGDNALSCHK 259
>11_08_0060 + 28108548-28109402
Length = 284
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 282 VWNVYRGGRQINVRNAFLDKIIRFKDF 362
+WN Y GGR+ V F D ++ DF
Sbjct: 125 LWNAYLGGRRAGVPRPFGDAVVDGIDF 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,534
Number of Sequences: 37544
Number of extensions: 301568
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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