Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C15
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)          29   4.4  
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)               29   4.4  
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)                  28   5.8  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   7.7  
SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                 28   7.7  

>SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = +2

Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIKQ 613
           GLKF++ TD +  G+  LLKKIY E+Y  + ++NP   +  PI  +LF   L   + Q
Sbjct: 145 GLKFIVLTDPRQVGMDGLLKKIY-ELYGDFALKNPFYSLDMPIRCELFDLNLQKALDQ 201


>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
          Length = 658

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 217 NLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKL-MYGMLFSIKS-FVSKISPLDPK 378
           N  +  R GT  YYG   R +Q   S +E G + M G L S+K  ++ K   +D K
Sbjct: 151 NFDVQSRGGTFTYYGLAER-RQKESSFKEWGTVNMRGFLLSVKDYYLEKCEKVDKK 205


>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
          Length = 603

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 443 LKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSK 592
           +KF +N + + Q    +L        + Y+++ PL   G P+V+ LFK +
Sbjct: 513 IKFKVNDEEEFQNFNSVLS------ILSYLLKAPLVPSGAPVVNALFKQR 556


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 443 LKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSK 592
           +KF +N + + Q    +L        + Y+++ PL   G P+V+ LFK +
Sbjct: 379 IKFKVNDEEEFQNFNSVLS------ILSYLLKAPLVPSGAPVVNALFKQR 422


>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
          Length = 1466

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 566 WVHPFHIVDFLSYI*HKFQHKSFLGDLGRPVL 471
           W +PFH   FLS I   F H     D+ +P L
Sbjct: 306 WYYPFHYAPFLSDI-KDFSHYELKFDMSKPFL 336


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 424 LETPSGPEVCDEYRQPSTGRPRSPKKDLC*NLC 522
           LE P G ++    RQP+   P SP    C  LC
Sbjct: 452 LEVPMGLQILHPSRQPAMPNPCSPSNCGCQQLC 484


>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 413

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 362 EIFETND-FIEKSIPYINLPSSSIDIPDCFERF 267
           E FET+D ++E    Y NLP   ++ P C ERF
Sbjct: 235 EFFETSDDYLEHY--YSNLPLPCLEEPSCNERF 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,289,087
Number of Sequences: 59808
Number of extensions: 388125
Number of successful extensions: 872
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)