BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP02_F_C15 (656 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein par... 118 1e-26 AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein. 118 1e-26 BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein. 44 4e-04 AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein. 44 4e-04 AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein. 44 4e-04 >BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein particle complex 1 protein. Length = 145 Score = 118 bits (285), Expect = 1e-26 Identities = 53/82 (64%), Positives = 67/82 (81%) Frame = +1 Query: 205 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 384 MT++NLY+FDR G L+Y EW+R KQ+G+ EEE KLMYGMLFSI+SFVSK+SPLD KDG Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60 Query: 385 FSHYKTSKYTLHCLETPSGPEV 450 F ++TS+Y LH ETP+G +V Sbjct: 61 FLAFQTSRYKLHYYETPTGIKV 82 Score = 70.5 bits (165), Expect = 5e-12 Identities = 28/68 (41%), Positives = 47/68 (69%) Frame = +2 Query: 434 PQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIKQ 613 P G+K VMNTD +RD+L IY+ +YV+ +++NPLC +G+ + S+LF+S+L +++ Sbjct: 77 PTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRS 136 Query: 614 TPIHTVRA 637 P + RA Sbjct: 137 LPFFSARA 144 >AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein. Length = 145 Score = 118 bits (285), Expect = 1e-26 Identities = 53/82 (64%), Positives = 67/82 (81%) Frame = +1 Query: 205 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 384 MT++NLY+FDR G L+Y EW+R KQ+G+ EEE KLMYGMLFSI+SFVSK+SPLD KDG Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60 Query: 385 FSHYKTSKYTLHCLETPSGPEV 450 F ++TS+Y LH ETP+G +V Sbjct: 61 FLAFQTSRYKLHYYETPTGIKV 82 Score = 70.5 bits (165), Expect = 5e-12 Identities = 28/68 (41%), Positives = 47/68 (69%) Frame = +2 Query: 434 PQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIKQ 613 P G+K VMNTD +RD+L IY+ +YV+ +++NPLC +G+ + S+LF+S+L +++ Sbjct: 77 PTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRS 136 Query: 614 TPIHTVRA 637 P + RA Sbjct: 137 LPFFSARA 144 >BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein. Length = 219 Score = 44.4 bits (100), Expect = 4e-04 Identities = 22/57 (38%), Positives = 34/57 (59%) Frame = +2 Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIK 610 G+KFV+ D + G+ LL+KIY EIY + ++NP + PI +LF L L ++ Sbjct: 152 GIKFVVLADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207 Score = 29.9 bits (64), Expect = 8.3 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 310 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 441 KLM +F S+ + S++SP G +T + LHC +T +G Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTG 152 >AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein. Length = 219 Score = 44.4 bits (100), Expect = 4e-04 Identities = 22/57 (38%), Positives = 34/57 (59%) Frame = +2 Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIK 610 G+KFV+ D + G+ LL+KIY EIY + ++NP + PI +LF L L ++ Sbjct: 152 GIKFVVLADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207 Score = 29.9 bits (64), Expect = 8.3 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 310 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 441 KLM +F S+ + S++SP G +T + LHC +T +G Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTG 152 >AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein. Length = 219 Score = 44.4 bits (100), Expect = 4e-04 Identities = 22/57 (38%), Positives = 34/57 (59%) Frame = +2 Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIK 610 G+KFV+ D + G+ LL+KIY EIY + ++NP + PI +LF L L ++ Sbjct: 152 GIKFVVLADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207 Score = 29.9 bits (64), Expect = 8.3 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +1 Query: 310 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 441 KLM +F S+ + S++SP G +T + LHC +T +G Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTG 152 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 89,571,655 Number of Sequences: 237096 Number of extensions: 1835853 Number of successful extensions: 2698 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2695 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 7366354010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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