Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C15
         (656 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032717-1|AAH32717.1|  145|Homo sapiens trafficking protein par...   118   1e-26
AF129332-1|AAD44697.1|  145|Homo sapiens MUM2 protein.                118   1e-26
BC010866-1|AAH10866.1|  219|Homo sapiens TRAPPC4 protein protein.      44   4e-04
AF151862-1|AAD34099.1|  219|Homo sapiens CGI-104 protein protein.      44   4e-04
AF105025-1|AAF21897.1|  219|Homo sapiens unknown protein.              44   4e-04

>BC032717-1|AAH32717.1|  145|Homo sapiens trafficking protein
           particle complex 1 protein.
          Length = 145

 Score =  118 bits (285), Expect = 1e-26
 Identities = 53/82 (64%), Positives = 67/82 (81%)
 Frame = +1

Query: 205 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 384
           MT++NLY+FDR G  L+Y EW+R KQ+G+  EEE KLMYGMLFSI+SFVSK+SPLD KDG
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 385 FSHYKTSKYTLHCLETPSGPEV 450
           F  ++TS+Y LH  ETP+G +V
Sbjct: 61  FLAFQTSRYKLHYYETPTGIKV 82



 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 28/68 (41%), Positives = 47/68 (69%)
 Frame = +2

Query: 434 PQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIKQ 613
           P G+K VMNTD     +RD+L  IY+ +YV+ +++NPLC +G+ + S+LF+S+L  +++ 
Sbjct: 77  PTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRS 136

Query: 614 TPIHTVRA 637
            P  + RA
Sbjct: 137 LPFFSARA 144


>AF129332-1|AAD44697.1|  145|Homo sapiens MUM2 protein.
          Length = 145

 Score =  118 bits (285), Expect = 1e-26
 Identities = 53/82 (64%), Positives = 67/82 (81%)
 Frame = +1

Query: 205 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 384
           MT++NLY+FDR G  L+Y EW+R KQ+G+  EEE KLMYGMLFSI+SFVSK+SPLD KDG
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 385 FSHYKTSKYTLHCLETPSGPEV 450
           F  ++TS+Y LH  ETP+G +V
Sbjct: 61  FLAFQTSRYKLHYYETPTGIKV 82



 Score = 70.5 bits (165), Expect = 5e-12
 Identities = 28/68 (41%), Positives = 47/68 (69%)
 Frame = +2

Query: 434 PQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIKQ 613
           P G+K VMNTD     +RD+L  IY+ +YV+ +++NPLC +G+ + S+LF+S+L  +++ 
Sbjct: 77  PTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRS 136

Query: 614 TPIHTVRA 637
            P  + RA
Sbjct: 137 LPFFSARA 144


>BC010866-1|AAH10866.1|  219|Homo sapiens TRAPPC4 protein protein.
          Length = 219

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 34/57 (59%)
 Frame = +2

Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIK 610
           G+KFV+  D +  G+  LL+KIY EIY  + ++NP   +  PI  +LF   L L ++
Sbjct: 152 GIKFVVLADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207



 Score = 29.9 bits (64), Expect = 8.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 310 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 441
           KLM   +F S+ +  S++SP     G    +T  + LHC +T +G
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTG 152


>AF151862-1|AAD34099.1|  219|Homo sapiens CGI-104 protein protein.
          Length = 219

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 34/57 (59%)
 Frame = +2

Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIK 610
           G+KFV+  D +  G+  LL+KIY EIY  + ++NP   +  PI  +LF   L L ++
Sbjct: 152 GIKFVVLADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207



 Score = 29.9 bits (64), Expect = 8.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 310 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 441
           KLM   +F S+ +  S++SP     G    +T  + LHC +T +G
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTG 152


>AF105025-1|AAF21897.1|  219|Homo sapiens unknown protein.
          Length = 219

 Score = 44.4 bits (100), Expect = 4e-04
 Identities = 22/57 (38%), Positives = 34/57 (59%)
 Frame = +2

Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIK 610
           G+KFV+  D +  G+  LL+KIY EIY  + ++NP   +  PI  +LF   L L ++
Sbjct: 152 GIKFVVLADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207



 Score = 29.9 bits (64), Expect = 8.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 310 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSG 441
           KLM   +F S+ +  S++SP     G    +T  + LHC +T +G
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTG 152


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,571,655
Number of Sequences: 237096
Number of extensions: 1835853
Number of successful extensions: 2698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2695
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)