Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C15
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical ...    87   1e-17
U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    31   0.95 
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z75550-5|CAA99924.2|  747|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin ...    30   1.7  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division...    27   8.9  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    27   8.9  

>AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical
           protein DC2.3b protein.
          Length = 472

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 39/82 (47%), Positives = 58/82 (70%)
 Frame = +1

Query: 205 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 384
           MTIYN+YIFDR G  LYY EW R+KQSG++  +E KL++GM+ S+KSFV +++  D    
Sbjct: 1   MTIYNVYIFDREGQCLYYDEWFRTKQSGLAPIQEYKLVFGMMLSMKSFVDRLATNDSNQT 60

Query: 385 FSHYKTSKYTLHCLETPSGPEV 450
            ++YKTS Y +  LE+ +  ++
Sbjct: 61  VNYYKTSAYKMTFLESATSIKI 82



 Score = 32.7 bits (71), Expect = 0.24
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 443 LKFVMNTDNQAQGVRDLLKKIY 508
           +K ++NTD  A G+RDLL KIY
Sbjct: 80  IKIMLNTDPNATGIRDLLHKIY 101


>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 440 GLKFVMNTDNQAQGVRD-LLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIKQ 613
           G+KFV+ T   +    D LL K+Y E+Y  + ++NP   +  PI +  F   +   +++
Sbjct: 157 GVKFVVITSAASNIAADSLLSKMY-ELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLER 214


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
            ZK1193.2 protein.
          Length = 1250

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 295  IEEEGKLMYGMLFSI-KSFVSKISPLDPKDGFSHYKTSKYTLHC 423
            I E G L Y  +F + ++ ++  SPL  +DG ++   S+YT  C
Sbjct: 950  ISEGGTLTYAQIFDLDETRIAWASPLIKRDGCAYPFISEYTFQC 993


>Z75550-5|CAA99924.2|  747|Caenorhabditis elegans Hypothetical
           protein T22C1.7 protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 253 YYGEWNRSKQSGMSIEEEGKLMY 321
           Y G+W   K+ G+ IE+ G+ +Y
Sbjct: 60  YQGQWQNGKRHGLGIEQRGRWLY 82


>AB069909-1|BAB62876.1|  747|Caenorhabditis elegans junctophilin
           protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 253 YYGEWNRSKQSGMSIEEEGKLMY 321
           Y G+W   K+ G+ IE+ G+ +Y
Sbjct: 60  YQGQWQNGKRHGLGIEQRGRWLY 82


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 226  IFDRYGTLLYYGEWNRSKQSGMSIEEEGK 312
            + D YG  LYY +W+R       ++ +GK
Sbjct: 1409 VLDLYGRHLYYSDWHRENPYIGRVDMDGK 1437


>AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division
           cycle related protein25.2 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 322 RTLICLPPL*TFQTVLNDSTHHNTIKYHIDRI 227
           R+    P L TF+   ++  HH  +KYH+  +
Sbjct: 184 RSATAFPSLETFEEEEHEEQHHLNVKYHLKTV 215


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 358 ISPLDPKDGFSHYKTSKYTLHCL-ETPSGPEVCD 456
           ISP  P DG   Y+  ++  H L + P  P +CD
Sbjct: 276 ISPNGPADGCEPYEVFEWLQHLLKQHPKSPILCD 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,808,906
Number of Sequences: 27780
Number of extensions: 317752
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)