Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C15
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.28 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.28 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +2

Query: 35  YSPSRMQII**QNVKYESFIKSNILMLLFL*SGHIYFMKIRNLFSSRNGVL*GENKK*PF 214
           + P R Q+I   N++  SF+ S +   L +    +Y +K R +  + N     E+K   F
Sbjct: 656 FYPDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFN-----ESKFIGF 710

Query: 215 TIYTYSI 235
           T+YT  I
Sbjct: 711 TMYTTCI 717


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +2

Query: 35  YSPSRMQII**QNVKYESFIKSNILMLLFL*SGHIYFMKIRNLFSSRNGVL*GENKK*PF 214
           + P R Q+I   N++  SF+ S +   L +    +Y +K R +  + N     E+K   F
Sbjct: 746 FYPDRKQVILKCNIQDMSFLFSQLYNALLILISTVYAVKTRKIPENFN-----ESKFIGF 800

Query: 215 TIYTYSI 235
           T+YT  I
Sbjct: 801 TMYTTCI 807


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 168  VLETV-YSKEKIKNDHLQFIHIRSIWYFIVLW*VESFKTV 284
            + ETV +SKE  K  HLQ +++++   + V+  V++F  V
Sbjct: 1026 MFETVDFSKEDGKEHHLQIMNLKTYTQYSVV--VQAFNKV 1063


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 309 QINVRNAFLDKIIRFKDF 362
           Q+  R  +LD+ +RF DF
Sbjct: 83  QLTFREQWLDERLRFNDF 100


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 309 QINVRNAFLDKIIRFKDF 362
           Q+  R  +LD+ +RF DF
Sbjct: 83  QLTFREQWLDERLRFNDF 100


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 275 ERFHSP*YNKVPY 237
           +RFH+  Y+ VPY
Sbjct: 211 DRFHNDKYSNVPY 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,457
Number of Sequences: 438
Number of extensions: 3865
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)