Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C15
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    61   7e-10
At5g02280.1 68418.m00151 synbindin, putative similar to Swiss-Pr...    34   0.096
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    28   4.8  

>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
 Frame = +1

Query: 220 LYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG----- 384
           +Y+F+R G  L Y EWNR   + ++ +++ KLM+G+LFS+KS  +K+ P++   G     
Sbjct: 26  MYVFNRNGVCLLYKEWNRPLHT-LNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGVP 84

Query: 385 --------FSHYKTSKYTLHCLETPSGPEVCDEYRQPSTGRPRSPKK 501
                   F  ++T+ Y L  +ETPSG ++      P TG  R   K
Sbjct: 85  QLPGQGCSFHSFRTNTYKLSFMETPSGIKII-LVTHPKTGDLRESLK 130



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 21/59 (35%), Positives = 39/59 (66%)
 Frame = +2

Query: 434 PQGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLXLFIK 610
           P G+K ++ T  +   +R+ LK IY+ +YV+Y+++NP+   G PI S+LF + L  +++
Sbjct: 109 PSGIKIILVTHPKTGDLRESLKYIYS-LYVEYVVKNPIYSPGSPIKSELFNTALDQYVR 166


>At5g02280.1 68418.m00151 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 141

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 440 GLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKL 595
           G KF +  +     +  LL+ IY E+Y  Y+++NP  E+  PI  +LF   L
Sbjct: 77  GTKFFVVCEPGTPHMESLLRYIY-ELYTDYVLKNPFYEIEMPIRCELFDINL 127



 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/77 (22%), Positives = 36/77 (46%)
 Frame = +1

Query: 211 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 390
           IY+LYI ++ G L++Y +       G     +   +  +  S+ +   ++SP++   G  
Sbjct: 4   IYSLYIINKSGGLIFYKDCG---TKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 391 HYKTSKYTLHCLETPSG 441
             +   + LHC ++  G
Sbjct: 61  LLEADTFDLHCFQSLPG 77


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 292 SIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGPEVCDEYRQP 471
           S+E +GK    +LFSI+S + +++ +   D  S  K   +   CL + +G  V D     
Sbjct: 221 SMELQGKFCTDLLFSIQSGICELNNMQELD-LSQNKLVGHLPSCLTSLTGLRVLDLSSNK 279

Query: 472 STG 480
            TG
Sbjct: 280 LTG 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,865
Number of Sequences: 28952
Number of extensions: 278028
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)