Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C13
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 193 9e-50
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 191 5e-49
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 190 8e-49
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977... 29 3.2
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 4.2
06_03_0290 - 19193707-19193752,19193822-19194090 28 5.6
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 7.4
04_01_0596 - 7852529-7855185,7855545-7855581 28 7.4
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 193 bits (471), Expect = 9e-50
Identities = 95/153 (62%), Positives = 119/153 (77%)
Frame = +3
Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 372 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEI 551
+VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R I +KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 552 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGI 650
+ ++ +L+E+V+K IP+ I K+IEKA I
Sbjct: 172 MANQASSCDLKELVSKFIPEVIGKEIEKATSSI 204
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +2
Query: 68 KKVLTKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 187
KK KK VDPF +KDWYD+KAPS+F+ R +G TLV+RTQ
Sbjct: 13 KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQ 52
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 191 bits (465), Expect = 5e-49
Identities = 94/153 (61%), Positives = 118/153 (77%)
Frame = +3
Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 372 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEI 551
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R I +KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 552 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGI 650
+ ++ +L+E+V+K IP+ I K+IEKA I
Sbjct: 172 MVNQASSCDLKELVSKFIPEVIGKEIEKATSSI 204
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +2
Query: 68 KKVLTKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 187
KK KK VDPF +KDWYD+KAPS+F+ R VG TLV+RTQ
Sbjct: 13 KKGSKKKTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQ 52
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 190 bits (463), Expect = 8e-49
Identities = 94/153 (61%), Positives = 117/153 (76%)
Frame = +3
Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 372 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEI 551
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R I +KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 552 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGI 650
+ + +L+E+V+K IP+ I K+IEK+ I
Sbjct: 172 MANQASTCDLKELVSKFIPEVIGKEIEKSTSSI 204
Score = 61.3 bits (142), Expect = 7e-10
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = +2
Query: 68 KKVLTKKIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 187
+K KK VDPF++KDWYD+KAP++FS R +G TLV+RTQ
Sbjct: 13 RKGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQ 52
>02_02_0398 -
9777596-9778146,9778229-9778400,9778522-9778639,
9778751-9779014,9779287-9779354,9779520-9780145,
9780257-9780412,9780528-9780625,9780741-9780832,
9780940-9781011
Length = 738
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 96 THSLAKIGTMSRLRLCSARGKSAPRLSTVPXATKIASEGLKGRVF 230
T +LA I S++ LCS PRLS ++ G G +F
Sbjct: 374 TQTLASINITSKVVLCSPPSLMPPRLSLGDIIGRVIKAGANGLIF 418
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -1
Query: 277 DLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEH 140
DL A A +T K +P P+ ++VAL + + +++ LAEH
Sbjct: 778 DLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 823
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 328 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 417
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -1
Query: 370 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 227
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 277 DLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEH 140
DL A A T K +P P+ ++VAL + + +++ LAEH
Sbjct: 670 DLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 715
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,408,309
Number of Sequences: 37544
Number of extensions: 385271
Number of successful extensions: 1078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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