Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C13
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         126   2e-29
SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)                 29   3.3  
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   3.3  
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)                    28   7.6  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  126 bits (304), Expect = 2e-29
 Identities = 57/86 (66%), Positives = 72/86 (83%)
 Frame = +3

Query: 393 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIXKKMCEIITRDVTN 572
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AI KKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 573 SELREVVNKLIPDSIAKDIEKACHGI 650
           ++L+EVVNKLIPDSI KDIEK+C  I
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEKSCQSI 87


>SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -2

Query: 225 LFPSILPKQFS-LXWVRLTSVVP--TCLLLNIDGALTSYQSLRVNGSTIFFVNTFFTAL 58
           L P +L  Q + L W+ + +V+   TCL + I  +L  +QS +++    F +N F  A+
Sbjct: 285 LVPLVLIHQLTVLAWLSMLAVLSLITCLFIIIGYSLQEWQSWKIHNIPDFDINNFPVAI 343


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 225  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 314
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
          Length = 924

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = -1

Query: 427 VVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACR 248
           V  T + +  + C F T+  SL   R +      ++R      +  N    L  +++A R
Sbjct: 101 VFVTDLRSKAKTCEFGTLQDSLIKDRIVCGIDSDSIR----ERLLRNTELTLDTAINAVR 156

Query: 247 SARETSKTLPFNPSEAIFVALGTVDKRG 164
           +A ETSKT   N  +   +A G ++KRG
Sbjct: 157 AA-ETSKTQIENLKDGASLAAGALNKRG 183


>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 267 RQCQLVDQPGKLRKLFPSILPKQFSLXWVRLTSVVPTCLLLNIDGALTSYQSLRVNGSTI 88
           RQ ++  QP ++R     +    F +  V L + +P  ++LN+D  L   Q      ST+
Sbjct: 211 RQRKIKPQPNRIRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTL 270

Query: 87  F--FVNTF 70
           F  + N+F
Sbjct: 271 FLRYSNSF 278


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 412  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 248
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 89  IVDPFTRKDWYDVKAPSMFSKRQ 157
           +V+P+  KDW D    SMFS RQ
Sbjct: 98  LVEPWRWKDWEDFTQSSMFSGRQ 120


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 286 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 191
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


>SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)
          Length = 756

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 47  RACRRAVKKVLTKKIVDPFTRKDWYDVK 130
           R C+R+  +   KK+ D  TRK W +VK
Sbjct: 7   RTCKRSFYQSKVKKLKDTNTRKWWREVK 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,092,119
Number of Sequences: 59808
Number of extensions: 434280
Number of successful extensions: 1259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)