Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C12
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          132   1e-31
SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)                     31   0.42 
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   6.8  
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)               27   9.0  
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)                  27   9.0  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  132 bits (320), Expect = 1e-31
 Identities = 66/107 (61%), Positives = 82/107 (76%)
 Frame = +2

Query: 47  RGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKAIKGRLNRLPAAGSGDMIV 226
           RGRGG++G KFRI+LGLP G+          + + + ++ K IKGRLNRLPAA SGDM++
Sbjct: 23  RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAV-KGIKGRLNRLPAAASGDMVL 81

Query: 227 ATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 367
           ATVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N  V V  +
Sbjct: 82  ATVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128


>SB_12300| Best HMM Match : UCH (HMM E-Value=6e-18)
          Length = 457

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 14  FQNFXYNKMSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRIC 151
           F+N  YN++S+ G GG  G    + L           +QH  Q +C
Sbjct: 231 FRNAIYNQLSENGGGGGLGQTLDLPLVGDINGDEMAWQQHDVQELC 276


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 382  ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 251
            A  FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714


>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 373 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 251
           FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 2   FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 405 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 265
           AT  V A    + L  T+ PAL++K+IN  +R  N  + L+    +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232


>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
          Length = 192

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 382 ALHFALVIDYDTRIVLKVYK-YSITPSE 302
           AL FAL + YDT+I++   K YSI+P E
Sbjct: 137 ALLFALYLVYDTQIMMGGGKMYSISPEE 164


>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
          Length = 916

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 142 KNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKGNA 273
           K++YVIA+Q    + E +        + GH   G + T EK NA
Sbjct: 135 KDVYVIALQRANENEEDSGEDSEEEEENGHLMNGDSKTEEKKNA 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,095
Number of Sequences: 59808
Number of extensions: 346882
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)