Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C12
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   198   1e-51
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  198 bits (484), Expect = 1e-51
 Identities = 97/132 (73%), Positives = 109/132 (82%)
 Frame = +2

Query: 38  MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKAIKGRLNRLPAAGSGD 217
           MSKRGRGG++GAKFRISLGLP G+         A+ + + S+   I+GRLNRLP+AG GD
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVY-GIRGRLNRLPSAGVGD 59

Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
           M V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITG
Sbjct: 60  MFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITG 119

Query: 398 PVAKECADLWPR 433
           PVAKECADLWPR
Sbjct: 120 PVAKECADLWPR 131


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 157 SHTDSLRPVLSAQLITAPSWETQGDTEFRSRGTTTSSLRHF 35
           S T   RPVL+ + +T  +W T       ++ TTT++LR++
Sbjct: 356 STTPFFRPVLTTRPVTTTTWRTTRRITTTTKPTTTTTLRNY 396


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 358 DYDTRIVLKVYKYSITPSERFPL 290
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 202 RRQSVQATFDSLGQRSHTDSLRPVLSAQLITAPSWETQGDTEFRSRGTTTSS 47
           RR++ + T+ S GQ+   DS     +   +  P  E QG +  RS G  T +
Sbjct: 649 RREAQRLTYRSNGQQDSNDSKMGPRTLGYVYLPELEIQGASPPRSPGPLTGN 700


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 472 TVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 359
           ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 86  SIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,569,938
Number of Sequences: 27780
Number of extensions: 251247
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)