Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C12
(510 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 196 7e-51
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 196 7e-51
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 196 7e-51
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 39 0.002
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 39 0.002
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 35 0.037
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 1.8
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 3.2
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 27 7.3
At5g66560.1 68418.m08391 phototropic-responsive NPH3 family prot... 27 9.7
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain... 27 9.7
At1g50840.1 68414.m05717 polI-like DNA polymerase, putative simi... 27 9.7
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 196 bits (478), Expect = 7e-51
Identities = 92/132 (69%), Positives = 112/132 (84%)
Frame = +2
Query: 38 MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKAIKGRLNRLPAAGSGD 217
MSKRGRGG++G KFR+SLGLP ++ A+ + + S+ K IKGRLNRLP+A GD
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGD 59
Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
M++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITG
Sbjct: 60 MVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITG 119
Query: 398 PVAKECADLWPR 433
P+ KECADLWPR
Sbjct: 120 PIGKECADLWPR 131
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 196 bits (478), Expect = 7e-51
Identities = 92/132 (69%), Positives = 112/132 (84%)
Frame = +2
Query: 38 MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKAIKGRLNRLPAAGSGD 217
MSKRGRGG++G KFR+SLGLP ++ A+ + + S+ K IKGRLNRLP+A GD
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGD 59
Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
M++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITG
Sbjct: 60 MVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITG 119
Query: 398 PVAKECADLWPR 433
P+ KECADLWPR
Sbjct: 120 PIGKECADLWPR 131
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 196 bits (478), Expect = 7e-51
Identities = 92/132 (69%), Positives = 112/132 (84%)
Frame = +2
Query: 38 MSKRGRGGSAGAKFRISLGLPAGSSNQLRRQHRAQRICM*SLSKAIKGRLNRLPAAGSGD 217
MSKRGRGG++G KFR+SLGLP ++ A+ + + S+ K IKGRLNRLP+A GD
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGD 59
Query: 218 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 397
M++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITG
Sbjct: 60 MVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITG 119
Query: 398 PVAKECADLWPR 433
P+ KECADLWPR
Sbjct: 120 PIGKECADLWPR 131
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 38.7 bits (86), Expect = 0.002
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Frame = +2
Query: 167 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFE 337
+A+KG+ A GD IVA+VK+ P + K V+ VV+R R DG + F+
Sbjct: 68 QALKGK----KGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFD 123
Query: 338 DNAGVIVNNKGEMK-------GSAITGPVAKE 412
DNA V+V++K + G+ + GPV E
Sbjct: 124 DNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 155
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 38.7 bits (86), Expect = 0.002
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Frame = +2
Query: 167 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFE 337
+A+KG+ A GD IVA+VK+ P + K V+ VV+R R DG + F+
Sbjct: 69 QALKGK----KGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFD 124
Query: 338 DNAGVIVNNKGEMK-------GSAITGPVAKE 412
DNA V+V++K + G+ + GPV E
Sbjct: 125 DNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 156
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 34.7 bits (76), Expect = 0.037
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 15/72 (20%)
Frame = +2
Query: 212 GDMIVATVKKGKPELRKKV----MP-----------AVVIRQRKPFRRRDGVFIYFEDNA 346
GD+IV +VK+ P ++KKV +P VV+R P R DG + F+DNA
Sbjct: 81 GDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNA 140
Query: 347 GVIVNNKGEMKG 382
V+V K E KG
Sbjct: 141 IVVVGIK-EKKG 151
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 274 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 185
R YL PEF+F P GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 346 RIVLKVYKYSITPSERFPLPDDHCRHYL 263
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 2 PYYFFQNFXYNKMSKRGRGGSAGAKFRISLGLPAG 106
PY + Q + K K + G AGA + LGL AG
Sbjct: 259 PYGYPQQQAHGKPQKPKKHGKAGAGMGLGLGLGAG 293
>At5g66560.1 68418.m08391 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 668
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 36 KCLREDVVVPRERNSVSPWVSQLGAVINCADNTGRKESVCD 158
K LRE + + SVSP LG C D+ + S D
Sbjct: 171 KSLRESIKALKACESVSPLAGSLGITEQCIDSIVSRASSAD 211
>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
protein similar to SP|Q06881 Biotin carboxyl carrier
protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
contains Pfam profile PF00364: Biotin-requiring enzyme
Length = 274
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -3
Query: 247 FTLFDCGHNHVPGTGRRQSVQATFDSLGQRSHTDSLRPVLSAQLITAPSWETQGDTEFRS 68
F+ CG+ +P R Q+ L R+ +LR V + QL T P ET+ + +
Sbjct: 18 FSRLRCGNLLIPNNQRLFVDQSPMKYLSLRT---TLRSVKAIQLSTVPPAETEAIADVKD 74
Query: 67 RGTTTSSL 44
T S++
Sbjct: 75 SDETKSTV 82
>At1g50840.1 68414.m05717 polI-like DNA polymerase, putative similar
to PolI-like DNA polymerase [Oryza sativa] GI:19912795
contains Pfam profiles PF01612: 3'-5' exonuclease,
PF00476: DNA polymerase I family A
Length = 1050
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -3
Query: 112 TAPSWETQG--DTEFRSRGTTTSSLRHFVVSKILKEIIG 2
+APS+ET D EF+ RGTT S+ + + KE+IG
Sbjct: 158 SAPSYETSQKIDYEFKPRGTTRST-----TATLNKELIG 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,953,893
Number of Sequences: 28952
Number of extensions: 235769
Number of successful extensions: 699
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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