Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    64   2e-11
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      58   1e-09
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    29   0.44 
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.1  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   5.5  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   9.5  
SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit Ym...    25   9.5  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   9.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.5  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
 Frame = +2

Query: 131 EKEAQEWIEGVLAS*IPPWLNYLRMSSRHGTVLCQLINKLKPGSVPKINTTGGQFKMMEN 310
           EKEA+EWIE  L + +   L+ L    + G +LC++  +    ++ +   +   F  MEN
Sbjct: 6   EKEAREWIEETLHTKLNAQLDLLD-QLQSGVILCRICKEALGANI-RYKESNMPFVQMEN 63

Query: 311 ITNF-QSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEWSGPCLGPKP 487
           I+ F   A +   VP  D+FQT DL+E+++  QV+ ++ +  R   +        LGPK 
Sbjct: 64  ISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKL 123

Query: 488 ADECKRDFS-DEVLKAGQTVIGLQAGSNKGATQSGQNLGAGRK 613
           A++  R FS  +  +  + V  LQ GS    TQ  + +   R+
Sbjct: 124 AEKKPRVFSAQQQREFREGVNSLQYGSFDMPTQGTEKIAFSRR 166


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
 Frame = +2

Query: 137 EAQEWIEGVLAS*IPPWLNYLRMSSRHGTVLCQLINKLKPGSVPKINTTGG-QFKMMENI 313
           EA++WIE  L + + P   +   S R+G VL  L+ K +P  + KI  +   QF+  +NI
Sbjct: 46  EAKKWIEECLGTDLGPTSTF-EQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNI 104

Query: 314 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 430
             F   I   G+P+I  F+  D++E K++ +V+  + AL
Sbjct: 105 NKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 2   ESSLCYXSAHHL--NTRKKHSHNSHNMSLERQVRAKIASKRNPEKEKEAQEWIEGV 163
           ES   Y S+ HL  ++R K   N +N S E +   +I+      K+KE +E++E V
Sbjct: 127 ESVASYDSSTHLRRSSRSKKPVN-YNSSSESESEEQISKATKKVKQKEEEEYVEEV 181


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 194 YLRMSSRHGTVLCQLI 241
           Y+++++ HGT+LC LI
Sbjct: 142 YVQLTNNHGTILCALI 157


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 309  TSQTSSLQLKHMVYPTSMCSKP*IYGRKKTSPK 407
            TS+ + L +K   YP+S+C    +  R   SPK
Sbjct: 921  TSKLNDLVIKEFTYPSSLCDN--VLVRSSPSPK 951


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 241 DELAKNSAVP*GHPQIVQPGGN 176
           DEL KN +V  GHP+I +   N
Sbjct: 284 DELVKNPSVTKGHPEIHESSEN 305


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 370 LEHIDVGYTIC--FNCRLEVCDVLHHFELSTGGVDL 269
           L  +D+G  +C  FNCR     +L   +L + GV+L
Sbjct: 677 LYDMDLGIRLCLQFNCRRSAVKILVLMKLYSQGVEL 712


>SPCC1919.08c |mrpl33||mitochondrial ribosomal protein subunit
           YmL33|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 97

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 164 LAS*IPPWLNYLRMSSRHGTVLCQLINKLKPGSVPKI 274
           L+S +   L+ LR++ RH  V C  +N +  G + K+
Sbjct: 15  LSSKVRSVLHSLRLTKRHSVVYCD-VNPINAGRIFKV 50


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 502 FAFVSGLGSEAGAAPFRVSVSLTTEGKQCADYLGDVFFL 386
           FAFVS    EA +  F  ++     G Q + +   +FF+
Sbjct: 51  FAFVSEKSLEAASVKFVATIIAERMGAQFSSFYDKIFFV 89


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/58 (17%), Positives = 25/58 (43%)
 Frame = +2

Query: 107 ASKRNPEKEKEAQEWIEGVLAS*IPPWLNYLRMSSRHGTVLCQLINKLKPGSVPKINT 280
           + K  P +        +G+ +  +    +Y  ++   G + C  ++ L    +P++NT
Sbjct: 475 SKKIAPRQRSNVSSMCDGICSIAVSSDGDYFAVADTVGNIFCYSLSNLTYSELPRVNT 532


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 490 SGLGSEAGAAPFRVSVSLTTEGKQ 419
           SG G+ AG++PF  S +LT E K+
Sbjct: 656 SGFGNTAGSSPF--SFNLTKESKE 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,793
Number of Sequences: 5004
Number of extensions: 59366
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)