Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C10
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 8e-24
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 69 3e-12
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 63 2e-10
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 49 4e-06
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 38 0.007
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 37 0.012
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 36 0.038
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 30 1.4
SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38) 30 1.9
SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06) 30 1.9
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_56498| Best HMM Match : Tropomyosin (HMM E-Value=0.13) 28 5.8
SB_34783| Best HMM Match : Gam (HMM E-Value=0.24) 28 5.8
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 5.8
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012) 28 7.6
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 107 bits (257), Expect = 8e-24
Identities = 73/183 (39%), Positives = 105/183 (57%), Gaps = 7/183 (3%)
Frame = +2
Query: 92 VRAKIASKRNPEKEKEAQEWIEGVLAS*I---PPWLNYLRMSSRHGTVLCQLINKLKPGS 262
V+A I SK +P KE+EA++WI+ VL I ++ + + + G VLC+L N+L G
Sbjct: 420 VKAGIDSKYDPTKEEEARKWIDTVLGESIFGENGGVDTVHQTLKDGQVLCRLANRL--GG 477
Query: 263 VPKINTTGGQFKMMENITNFQSAIKA-YGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRE 439
KIN FK MENI NF S I+ GV D+FQTVDL+EK ++ V+ + A+GR
Sbjct: 478 DLKINQQKMPFKQMENIGNFLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRR 537
Query: 440 TYRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVI-GLQAG--SNKGATQSGQNLGAGR 610
Y + P LGPK + + R F++ L G+T+I Q G + AT SGQ+ G R
Sbjct: 538 AYSLGK-DVPQLGPKESTKNPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQR 596
Query: 611 KIL 619
+I+
Sbjct: 597 QII 599
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 86.6 bits (205), Expect = 2e-17
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Frame = +2
Query: 110 SKRNPEKEKEAQEWIEGVLAS*I---PPWLNYLRMSSRHGTVLCQLINKLKPGSVPKINT 280
+K + + +A WIEG+L + + + + G VLC++ NKL G KIN+
Sbjct: 62 AKYDSDLAAQATAWIEGILGERVFGGKTGADDVHEVLKDGQVLCRVANKL--GGNIKINS 119
Query: 281 TGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEW 460
+ FKMMEN F GVP D+FQTVDL+EK+++ V++ + ALGR+ + +
Sbjct: 120 SKMAFKMMENTGKFLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK- 178
Query: 461 SGPCLGPKPADECKRDFSDEVLKAGQ 538
+ LGPK A R+F++E +AGQ
Sbjct: 179 TCLALGPKEASANPREFTEEQRRAGQ 204
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 68.9 bits (161), Expect = 3e-12
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Frame = +2
Query: 101 KIASKRNPEKEKEAQEWIEGVLAS*I---PPWLNYLRMSSRHGTVLCQLINKLKPGSVPK 271
KI K +P++E+EA+ WIE VL + + ++ + G +L +L KL G+ K
Sbjct: 17 KILEKYDPQQEEEARIWIEAVLGEKVFGGAEGPDDVQKVLKDGKILARLAIKL--GAKIK 74
Query: 272 INTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRH 451
+N FK MENI NF S GV D FQT DL+ D A + S +
Sbjct: 75 VNEQNMPFKQMENIGNFLSHCGHLGVASGDQFQTADLY---DNANMTSCQLIKDLDI--- 128
Query: 452 AEWSGPCLGPKPADECKRDFSDEVLKAGQTVI 547
P LGPK A+ R+F++E L+AG++++
Sbjct: 129 -----PTLGPKEAEANVREFTEEQLRAGESIL 155
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +2
Query: 74 MSLERQVRAKIASKRNP---EKEKEAQEWIEGVLAS*IP-PWLNYLRMSSRHGTVLCQLI 241
+S E +K + P ++ K + WIEG + + + + + G VLC+L
Sbjct: 45 VSKENLKTSKFIMSKKPWPMDRAKVVRMWIEGKTSCNFGGDTADDFQNTLKSGVVLCKLA 104
Query: 242 NKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQV 409
N ++PG++ KIN F MMENI NF + ++ GV F T+DL+E K++ QV
Sbjct: 105 NAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGVASQYQFVTIDLFEGKNMHQV 160
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +2
Query: 212 RHGTVLCQLINKLKPGSVPKINTTGGQFKMMENITNF-QSAIKAYGVPDIDVFQTVDLWE 388
R G +LC++ NK+K ++PKI + F M ENI+ F + G+ +++FQTVDL+E
Sbjct: 310 RSGVILCKIANKIKSNAIPKIGESNKSFVMQENISKFLDFCERVLGLDRLNLFQTVDLFE 369
Query: 389 KKDIAQV 409
++++ V
Sbjct: 370 RQNVGMV 376
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = +2
Query: 236 LINKLKPGSVPKIN-TTGGQF---KMMENITNFQSAIKA--YGVPDIDVFQTVDLWEKKD 397
++N++ PG++ KI+ GG+F +++ENI F A + + +D+F DL+EK +
Sbjct: 203 VMNEVFPGAISKIHGINGGRFHGFQILENIEKFLKACQGEPFNCNVVDLFSPGDLYEKNN 262
Query: 398 IAQV 409
+ QV
Sbjct: 263 VGQV 266
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 50.4 bits (115), Expect = 1e-06
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Frame = +2
Query: 86 RQVRAKIASKRNPEKEKEAQEWIE--GVLAS*----IPPWLNY-LRMSSRHGTVLCQLIN 244
R A +S R+ E+ K A++W+ GVL + P + + S R G +LCQ+ N
Sbjct: 7 RTASALSSSGRDVEEWKMARDWMISIGVLPAHGRVTDPNFTLFDFAQSLRDGVLLCQVAN 66
Query: 245 KLKPGSVPKINTTG--GQFKMMENITNFQSA-IKAYGVPDIDVFQTVDLWEKKDIAQVVS 415
L PG+V + QF ++NI NF +A + + + D D+F +L++ D +VV+
Sbjct: 67 VLHPGAVVDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADGDLFDANELYDVSDFGKVVN 126
Query: 416 TLFAL 430
TL L
Sbjct: 127 TLSKL 131
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = +2
Query: 242 NKLKPGSVPKINTTGGQ--FKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 400
N ++PG + K + G+ FKMMENI F + IK+YGV + +F TVDL+EK+++
Sbjct: 189 NAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 48.8 bits (111), Expect = 4e-06
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +2
Query: 296 KMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEWSGPCL 475
+ MENI NF ++ GV +D+FQTVDL+EK+++A R + P L
Sbjct: 16 RKMENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAA------------RAKGLNCPQL 63
Query: 476 GPKPADECKRDFSDEVLKAGQTV 544
GPK A+ R F ++ L+AG+ +
Sbjct: 64 GPKEAEANPRSFDEDKLRAGKGI 86
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 260 SVPKINTTGGQFKMMENITNFQSAIKA--YGVPDIDVFQTVDLWEKKDIAQVVSTLFALG 433
+ P N M ENI NF +A + + D+FQTV L+E++++ QV+S + A
Sbjct: 884 NTPSTNRKSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFA 943
Query: 434 RETYRH 451
R+ +H
Sbjct: 944 RKVRKH 949
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 37.9 bits (84), Expect = 0.007
Identities = 28/84 (33%), Positives = 42/84 (50%)
Frame = +2
Query: 137 EAQEWIEGVLAS*IPPWLNYLRMSSRHGTVLCQLINKLKPGSVPKINTTGGQFKMMENIT 316
EA+ WIE A+ P + R S G +LC+LI + SV +IN G +N++
Sbjct: 32 EARRWIER--ATFTPFKNDDFRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLS 89
Query: 317 NFQSAIKAYGVPDIDVFQTVDLWE 388
F A +A G+ +F+ DL E
Sbjct: 90 VFFRACEALGLDKYQLFEHEDLDE 113
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +2
Query: 197 LRMSSRHGTVLCQLINKLKPGSVPKINTTGG------QFKMMENITNFQSAIKAYGVPDI 358
L S G VLC L+N G++P I+ K M+N+ F A K GV
Sbjct: 332 LPASLADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVDRE 391
Query: 359 DVFQTVDLWEKKDIAQVVSTLFAL 430
+ + D+ ++K +V +T+ AL
Sbjct: 392 LLCSSADILQEKSPQRVCATVQAL 415
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 281 TGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYR 448
T G F +N++NF + VPD+ +F+T DL K+ V+ TL + R+ ++
Sbjct: 100 THGSFVARDNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTLLEVARKAFK 155
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 302 MENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQV 409
M I F +GV D+FQTVDL+EK++I QV
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +2
Query: 467 PCLGPKPADECKRDFSDEVLKAGQTVI 547
P LGPK A+ R+F++E L+AG++++
Sbjct: 10 PTLGPKEAEANVREFTEEQLRAGESIL 36
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 212 RHGTVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVP 352
R G +C+L+N L+PG +P Q+A A+G+P
Sbjct: 454 RDGMAICELVNALQPGLIPDSKYKEKTNSEATAKIGIQTAHDAFGIP 500
>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
Length = 234
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 38 NTRKKHSHNSHNMSLERQVRAKIASKRNPEKEKEAQEWIEGVLAS 172
NTRK+ N S+E K A + PEK E ++ + V+A+
Sbjct: 32 NTRKQSHQEQQNASIEMSDAEKPAKAKKPEKPAEHPKYSDMVVAA 76
>SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)
Length = 841
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +2
Query: 212 RHGTVLCQLINKLKPGS---VPKINTTGGQFKMMENITNFQSAIKAYGVPDI--DVFQTV 376
RH LC + NK PGS PK T +F F+ ++ V D+ + +
Sbjct: 706 RHARELCVISNKKTPGSSLLTPKAKETNAKFHHCPTSLEFKYSMPKNKVKDVSRETAKAK 765
Query: 377 DLWE 388
D WE
Sbjct: 766 DKWE 769
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 473 LGPKPADECKRDFSDEVLKAGQTVIG 550
LGP P+D+ RDF L++GQ V G
Sbjct: 233 LGPDPSDKKVRDFIWNTLQSGQVVPG 258
>SB_56498| Best HMM Match : Tropomyosin (HMM E-Value=0.13)
Length = 437
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +1
Query: 157 GRPRELNSPLAELFEDVLKARHCSLPAHQQAEAWLCPQDQHHRWTVQNDGEH 312
GR + + ++EL ++ A HC A + A L P+ + +W+ +H
Sbjct: 11 GRLERVRAKISELRRNLRLAEHCVSEAREILNASLRPRPRDMQWSYSKISQH 62
>SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)
Length = 347
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +2
Query: 26 AHHLNT--RKKHSHNSHNMSLERQVRA---KIASKRNPEKEKEAQE 148
AH+L ++K H +H + + ++ K+A K+NP+K K+ +E
Sbjct: 32 AHYLQQLLQEKEDHIAHAQEMNKILKQRVEKLAQKQNPKKNKDTKE 77
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -1
Query: 654 ITLCWCCVHLPIKILRPAPRFCPD*VAPLLDPACRPITVC 535
+ +C+ CVHL +++ P C + P C + C
Sbjct: 1043 LPVCFSCVHLSVRVCLPVCFSCVHLSVRVCSPVCSRVFTC 1082
>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 356
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -1
Query: 465 PLHSACL*VSRPRANSVLTTWAMSFFSHRSTVWNTSMSGTPYALIADW 322
PLH+ L SR R + TW ++FF+ ++ ++ + DW
Sbjct: 134 PLHAGTLITSRRRYFLIAATWVIAFFNASPLLYTMTLDNNNLCQL-DW 180
>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
Length = 558
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 426 PSVVRLTDTRNGAAPASDPSPLTNANVTFLMKS*RPGK 539
PS +R+ D + P + P+T V + S +PGK
Sbjct: 20 PSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK 57
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 426 PSVVRLTDTRNGAAPASDPSPLTNANVTFLMKS*RPGK 539
PS +R+ D + P + P+T V + S +PGK
Sbjct: 467 PSTIRILDVCSNTTPCRELRPVTEGQVLKELHSLKPGK 504
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,994,725
Number of Sequences: 59808
Number of extensions: 503120
Number of successful extensions: 1441
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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