Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C10
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47500.1 68415.m05929 kinesin motor protein-related 45 4e-05
At1g09170.1 68414.m01024 kinesin motor protein-related similar t... 45 4e-05
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 44 9e-05
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 42 5e-04
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 42 5e-04
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 38 0.008
At5g41310.1 68418.m05020 kinesin motor protein-related 36 0.031
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 32 0.38
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 30 1.2
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 29 2.0
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 29 2.7
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-... 29 2.7
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-... 29 2.7
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 29 2.7
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic... 28 4.7
At4g01735.1 68417.m00225 expressed protein ; expression supporte... 28 4.7
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 28 4.7
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 28 6.2
At5g14570.1 68418.m01708 transporter, putative similar to trans-... 28 6.2
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) fa... 28 6.2
At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent phos... 28 6.2
At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent phos... 28 6.2
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos... 28 6.2
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 45.2 bits (102), Expect = 4e-05
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Frame = +2
Query: 95 RAKIASKRNPEKEKEAQEWIEGVLAS*IP--PWLNYLRMSSRHGTVLCQLINKLKPGSVP 268
RA+ A+ R E + + V A +P P LR+ R G +LC+++NK++PG+V
Sbjct: 39 RAEEAASRRYEAANWLRRMVGVVGAKDLPAEPTEEGLRLGLRSGIILCKVLNKVQPGAVS 98
Query: 269 KI------------NTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVV 412
K+ F+ EN+ NF AI+ G P F+ DL + + ++VV
Sbjct: 99 KVVESPCDAILVADGAPLSAFQYFENVRNFLVAIQEMGFP---TFEASDLEQGGNASRVV 155
Query: 413 STLFAL 430
+ + A+
Sbjct: 156 NCVLAI 161
>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
GB:AAB61066
Length = 1010
Score = 45.2 bits (102), Expect = 4e-05
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Frame = +2
Query: 200 RMSSRHGTVLCQLINKLKPGSVPK---------INTTG---GQFKMMENITNFQSAIKAY 343
R++ R G +LC ++N++KPG+VPK +N G F+ EN+ NF ++
Sbjct: 86 RIALRSGILLCNVLNRVKPGAVPKVVEAPNDPLVNQDGAALSAFQYFENLRNFLVFVEEM 145
Query: 344 GVPDIDVFQTVDLWEKKDIAQVVSTLFALGRETYRHAEWSG 466
G+P F+ D + A++V + AL ++YR + SG
Sbjct: 146 GIP---TFEVSDFEKGGKSARIVECVLAL--KSYREWKQSG 181
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 44.0 bits (99), Expect = 9e-05
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Frame = +2
Query: 200 RMSSRHGTVLCQLINKLKPGSVPKI-----NTTGG----QFKMMENITNFQSAIKAYGVP 352
R+ R G VLC ++NK+ PGSV K+ + G F+ ENI NF AI+ G+P
Sbjct: 76 RLGLRSGIVLCNVLNKVNPGSVSKVVEAPDDVADGAALSAFQYFENIRNFLVAIEEMGLP 135
Query: 353 DIDVFQTVDLWEKKDIAQVVSTLFAL 430
F+ D+ + ++V+ + AL
Sbjct: 136 S---FEASDMEKGGKSIRIVNCILAL 158
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 41.5 bits (93), Expect = 5e-04
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Frame = +2
Query: 146 EWIEGVLAS*IPPWL---NYLRMSSRHGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 313
EW+ L PW + LR R GTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 314 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 430
F +A+ +P F+ D+ E+ D+ V+ +L AL
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL 137
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 41.5 bits (93), Expect = 5e-04
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Frame = +2
Query: 146 EWIEGVLAS*IPPWL---NYLRMSSRHGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 313
EW+ L PW + LR R GTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 314 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 430
F +A+ +P F+ D+ E+ D+ V+ +L AL
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL 137
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 37.5 bits (83), Expect = 0.008
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Frame = +2
Query: 104 IASKRNPE---KEKEAQEWIEGVLAS*-IPPWLNYLRMSS--RHGTVLCQLINKLKPGSV 265
+AS+R E + +A +W++ V+ IP + S R+G +LC INK+ PG+V
Sbjct: 10 LASRRAEEAAARRFQAVQWLKSVVGQLGIPNQPSEKEFISCLRNGMILCNAINKIHPGAV 69
Query: 266 PKI----NTTGGQFKM------MENITNFQSAIKAYGVPDIDVFQ-TVDLWEKKDIAQVV 412
K+ + G++++ EN+ NF A++ +P + D E + +VV
Sbjct: 70 SKVVENYSYLNGEYQLPPAYQYFENVRNFLVALETLRLPGFEASDLEKDNLESGSVTKVV 129
Query: 413 STLFAL 430
+ L
Sbjct: 130 DCILGL 135
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 35.5 bits (78), Expect = 0.031
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +2
Query: 119 NPEKEKEAQEWIEGVLAS*IPPWL---NYLRMSSRHGTVLCQLINKLKPGSVPKINTTGG 289
N + + EW+ L PW LR GTVLC L+N+L PGS+ GG
Sbjct: 39 NKQGHQSLVEWLNETLPYLNLPWEASEEELRACLVDGTVLCNLLNQLSPGSM----RMGG 94
Query: 290 QFKM-MENITNFQSAIKAYGVP 352
F+ NI F +A+ +P
Sbjct: 95 SFEPGCVNIERFLAAMDEMTLP 116
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 203 MSSRHGTVLCQLINKLKPGSVPKI 274
++ R+G +LC ++NK+ PGSV K+
Sbjct: 20 LALRNGLILCNVLNKVNPGSVLKV 43
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Frame = +2
Query: 185 WLNYLRMSSRHGTVLCQLINKLKPGSVPKINTTGGQFKMMENI---TNFQSAI--KAYGV 349
W ++ ++S HG+ ++ KLK V + T+ F++ + N++ I +A+ +
Sbjct: 220 WASFFKVSVYHGSNRDMILEKLKARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRL 279
Query: 350 PD--IDVFQT-VDLWEKKDIAQVVSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDE 520
+ +++ +++ KK I + + E + EW P G E RDF DE
Sbjct: 280 KNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAP--GSLGTREHFRDFYDE 337
Query: 521 VLKAGQ 538
LK GQ
Sbjct: 338 PLKLGQ 343
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 212 RHGTVLCQLINKLKPGSVPK--INT--TGGQFKMMENITNFQSAIKAYGVPDIDV 364
+ G +LC+LIN PG++ + INT T ++ EN+T ++ KA G +++
Sbjct: 160 KDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGCTVVNI 214
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 176 IPPWLNYLRMSSRHGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAY 343
I P N L ++ G +LC+LIN PG++ + INT ++ EN T ++ KA
Sbjct: 150 INPSSNDLFEVAKDGVLLCKLINVAVPGTIDERAINTKSMLNPWERNENHTLCLNSAKAI 209
Query: 344 GVPDIDV 364
G +++
Sbjct: 210 GCTVVNI 216
>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
Zea mays, EMBL:X58573
Length = 235
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 443 YRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKG 574
Y + GP L P+ D KR+F DE+LK T + S KG
Sbjct: 99 YLDNTFEGPSLYPE--DHAKREFGDELLKYTDTFVKTMYVSLKG 140
>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
[Zea mays] EMBL:X58573
Length = 237
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 443 YRHAEWSGPCLGPKPADECKRDFSDEVLK-AGQTVIGLQAGSNKG 574
Y + + GP L P+ D KR+F +E+LK +T + GS KG
Sbjct: 101 YVDSNFDGPSLYPE--DSAKREFGEELLKYVDETFVKTVFGSFKG 143
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 176 IPPWLNYLRMSSRHGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAY 343
+ P N L + G +LC+LIN PG++ + INT ++ EN T ++ KA
Sbjct: 149 LDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAV 208
Query: 344 GVPDIDVFQTVDLWE 388
G +++ T DL E
Sbjct: 209 GCSVVNI-GTQDLAE 222
>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
to dynamin like protein 2a (ADL2a) [Arabidopsis
thaliana] GI:19032337; supported by cDNA gi:19032336
Length = 808
Score = 28.3 bits (60), Expect = 4.7
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Frame = -1
Query: 561 PACRPITVCPAFRTSSEKSRLHSSAGLGPR-------QGPLHSACL*VSRPRANSVLTTW 403
P RP RTSS S++ S + LG + QG + SA ++P AN+ T W
Sbjct: 551 PVARPKDTVEPDRTSSSTSQVKSRSFLGRQANGIVTDQGVV-SADAEKAQPAANASDTRW 609
Query: 402 AM-SFFSHRST--VWNTSMSGTPYA-LIADWKFVMFSIILNCPPVVL 274
+ S F T V S+ P++ + D + I L PP VL
Sbjct: 610 GIPSIFRGGDTRAVTKDSLLNKPFSEAVEDMSHNLSMIYLKEPPAVL 656
>At4g01735.1 68417.m00225 expressed protein ; expression supported
by MPSS
Length = 186
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 157 GRPRELNSPLAELFEDVLKARHCSLPAHQQAEAWLCP---QDQHH 282
G+ L+S L + + RHC P HQ + + P Q QH+
Sbjct: 70 GQATHLSSQLPVMMNQAIDERHCCQPYHQNNDLSVVPMETQQQHN 114
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 176 IPPWLNYLRMSSRHGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAY 343
I P N L + G +LC+LIN PG++ + INT ++ EN++ ++ KA
Sbjct: 142 INPTTNALFDLVKDGVLLCKLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAI 201
Query: 344 GVPDIDV 364
G +++
Sbjct: 202 GCTVVNI 208
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +2
Query: 218 GTVLCQLINKLKPGSVP--KIN-TTGGQFKMMEN 310
G V CQL++ + PG+VP K+N +++M++N
Sbjct: 40 GAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQN 73
>At5g14570.1 68418.m01708 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 493
Score = 27.9 bits (59), Expect = 6.2
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 221 TVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 400
+V Q + L G VP ++T ++ IT + A V +F D+ +++ I
Sbjct: 375 SVFVQAASGLVFGVVPFVSTRS--LGVVAGITGSGGTVGAV-VTQFLLFSGDDVRKQRSI 431
Query: 401 AQV--VSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVL 526
+ + ++ +FAL + +W G C GP + E + D S +L
Sbjct: 432 SLMGLMTFVFALSVTSIYFPQWGGMCCGPSSSSE-EEDISRGLL 474
>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 316
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 597 RFCPD*VAPLLDPA---CRPITVCPAFRTSSEKSRLHSSAGLGPRQ 469
RFC D + D A +P+ CP+F +SE R L P+Q
Sbjct: 178 RFCFDCIKKQADVALEFAKPVVNCPSFGCNSELQREDCEGVLKPKQ 223
>At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 479 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 610
P PA + +D + ++KA T +GL + + G ++ G N LGAGR
Sbjct: 46 PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93
>At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 479 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 610
P PA + +D + ++KA T +GL + + G ++ G N LGAGR
Sbjct: 46 PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93
>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 557
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 479 PKPA-DECKRDFSDE--VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 610
P PA D K D ++KA T +GL + + G ++ G N LGAGR
Sbjct: 44 PTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,708
Number of Sequences: 28952
Number of extensions: 341270
Number of successful extensions: 1051
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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