Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C08
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   126   2e-30
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   126   3e-30
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.9  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    27   2.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   9.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.9  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   9.9  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  126 bits (305), Expect = 2e-30
 Identities = 63/108 (58%), Positives = 76/108 (70%)
 Frame = +3

Query: 225 WFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 404
           W GS+K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 405 XKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTV 548
            +    +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNV 165



 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 20/45 (44%), Positives = 36/45 (80%)
 Frame = +2

Query: 56  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 190
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELK 47


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  126 bits (303), Expect = 3e-30
 Identities = 62/108 (57%), Positives = 77/108 (71%)
 Frame = +3

Query: 225 WFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 404
           W GS+K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 405 XKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTV 548
            +    +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNV 165



 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 19/45 (42%), Positives = 33/45 (73%)
 Frame = +2

Query: 56  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 190
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMK 47


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 453 NSPKQKDELIIEGNSLEDVSSSAALIQQS 539
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 226 HFSTFRRARVYHA--NVNSQVFKVPFENSA 143
           H++ +R AR YHA  NV  Q  +V F   A
Sbjct: 48  HYAKYRSARFYHAFRNVRQQYAQVKFNMDA 77


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 109 MDRKPVWDFDFLICYNLLHVWALF 38
           M+R P+  FDF+   N +H   LF
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF 317


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 517 ELETSSKELPSMINSSFCLGELTTVTPGAI 428
           EL TS+   PS   S  CL E+ T+ PG +
Sbjct: 654 ELLTSTFLSPSA-ESQVCLAEIKTIRPGLV 682


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -2

Query: 458 RVNDSHTRCHLYPXDVFXPQEVT 390
           ++N++++ CH YP  +  P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,168
Number of Sequences: 5004
Number of extensions: 43057
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)