Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C08
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        107   5e-24
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   31   0.63 
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                28   4.5  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   5.9  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  107 bits (258), Expect = 5e-24
 Identities = 44/75 (58%), Positives = 59/75 (78%)
 Frame = +3

Query: 213 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 392
           +V+ WF S+KELA V+T+ +H+ NMIKGV  G++YKMRAVYAHFPIN    E  +++E+R
Sbjct: 610 RVDVWFASRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVR 669

Query: 393 NFLGXKYIXRVKMAP 437
           NFLG KY+ RV+M P
Sbjct: 670 NFLGEKYVRRVRMRP 684



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 32/62 (51%), Positives = 42/62 (67%)
 Frame = +2

Query: 11  NDLFPGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 190
           N    GSC+     MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ 
Sbjct: 543 NICLKGSCLSCIVAMKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELT 602

Query: 191 MV 196
            V
Sbjct: 603 KV 604


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 493 LPSMINSSFCLGELTTVTPGAIFTLXMYXSPKKLRISIIE 374
           +P  I S   LG+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 523 AAELETSSKELPSMINSSFCLGELTTVTPGAIFTLXMYXSPKKLRISIIEL 371
           AAE++TS   L  + + S CL     VT   IFT  MY  P+++ ++   L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 35  VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 148
           ++ +  +K++  + K K  DG+ VH K+   TV+ PRG
Sbjct: 98  LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +3

Query: 237  KKELAAVRTVCSHVXNMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIEIRNFLGX 407
            K+ LAA + V +   N+ KGVT+G    K R V    PI    V T+G  + +       
Sbjct: 948  KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQGMPVTPG 1007

Query: 408  KYIXR-VKMAPGVTVVNS-PKQKDELIIEG 491
            + + + + + PG  V    P  +  ++ +G
Sbjct: 1008 RVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 110  VKSRLVTVKGPRGVLKRNFKHL 175
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,265
Number of Sequences: 59808
Number of extensions: 341027
Number of successful extensions: 787
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)