Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C08
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   152   2e-37
Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z83239-5|CAB05809.1|  160|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U49954-2|AAY86289.1|  192|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine r...    27   6.9  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  152 bits (368), Expect = 2e-37
 Identities = 69/112 (61%), Positives = 85/112 (75%)
 Frame = +3

Query: 213 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 392
           +V KWFG +KELAA+RTVCSH+ NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIR
Sbjct: 54  RVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIR 113

Query: 393 NFLGXKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTV 548
           NFLG K + RV +  GV    S  QKDE+++EGN ++ VS +AA IQQST V
Sbjct: 114 NFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAV 165



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/48 (41%), Positives = 34/48 (70%)
 Frame = +2

Query: 53  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 196
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERI 48


>Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 286 MFXTCEQTVLTAASSFLDPNHFSTFRRARVYH-ANVNSQVFKVPFENSA 143
           M  T E  ++  A S + PN  + F +  VYH A+V+  + K P  +SA
Sbjct: 437 MVETVESNIIANAKSIVVPNKSAVFEQGAVYHIADVHLNLCK-PTRDSA 484


>Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 286 MFXTCEQTVLTAASSFLDPNHFSTFRRARVYH-ANVNSQVFKVPFENSA 143
           M  T E  ++  A S + PN  + F +  VYH A+V+  + K P  +SA
Sbjct: 437 MVETVESNIIANAKSIVVPNKSAVFEQGAVYHIADVHLNLCK-PTRDSA 484


>Z83239-5|CAB05809.1|  160|Caenorhabditis elegans Hypothetical
           protein T09F5.9 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 240 FWIRTISQPSGERGFTMRMSTAKCLKFL 157
           F I +IS PSG   FT+ +ST++C KF+
Sbjct: 16  FPIASISCPSG---FTLLVSTSRCAKFI 40


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 181 NSQVFKVPFENSAGPFNCHQTRFHMDR 101
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 181 NSQVFKVPFENSAGPFNCHQTRFHMDR 101
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>U49954-2|AAY86289.1|  192|Caenorhabditis elegans Hypothetical
           protein Y102E9.5 protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 304 LVTPLIMFXTCEQTVLTAASSFLDPNHFSTFRRARVYHANVNSQVFKVPFENSAGPFNC 128
           LVT L++F   EQ  +++  + +  N  S + + + Y    NSQ  K P +    P+NC
Sbjct: 9   LVTLLVIF---EQ--ISSVGTHISSNSLSRYCKPKRYE--YNSQWCKGPIDGDCNPYNC 60


>AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein4 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 288 SCSXHVNRLSSRRQAPFWIRTISQPSGERGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 109
           SC    + L+    +PFWIR + + + E   TM    A     LL  P   L +T+R  +
Sbjct: 72  SCDIISHTLTFLAFSPFWIREVRKKNQECFLTMTYRDA----VLLLYPVIVLDITQRSSS 127

Query: 108 W 106
           W
Sbjct: 128 W 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,916
Number of Sequences: 27780
Number of extensions: 249509
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)