Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C08
(555 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 132 1e-31
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 132 2e-31
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 132 2e-31
At2g25660.1 68415.m03075 expressed protein 31 0.39
At5g62630.1 68418.m07861 expressed protein 28 4.8
At5g40690.1 68418.m04939 expressed protein 28 4.8
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 27 6.4
At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protei... 27 6.4
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 27 8.4
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 132 bits (320), Expect = 1e-31
Identities = 63/112 (56%), Positives = 78/112 (69%)
Frame = +3
Query: 213 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 392
K++ WFGS+K A++RT SHV N+I GVT+GF Y+MR VYAHFPIN N IEIR
Sbjct: 59 KIDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIR 118
Query: 393 NFLGXKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTV 548
NFLG K + +V+M GV +V S K KDE+I+EGN +E VS S ALI Q V
Sbjct: 119 NFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHV 170
Score = 53.6 bits (123), Expect = 8e-08
Identities = 20/48 (41%), Positives = 37/48 (77%)
Frame = +2
Query: 53 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV 196
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLI 48
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 132 bits (319), Expect = 2e-31
Identities = 61/112 (54%), Positives = 79/112 (70%)
Frame = +3
Query: 213 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 392
K++ WFG++K A++RT SHV N+I GVT+GF+YKMR VYAHFPIN IEIR
Sbjct: 59 KIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIR 118
Query: 393 NFLGXKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTV 548
NFLG K + +V+M GVT+V S K KDE++++GN +E VS S ALI Q V
Sbjct: 119 NFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHV 170
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +2
Query: 53 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRSPE-G*EMV 229
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + PE G + +
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLI--KDPETGKKKL 58
Query: 230 RIQK--GACRREDSLFTCXEH 286
+I G + S+ T H
Sbjct: 59 KIDSWFGTRKTSASIRTALSH 79
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 132 bits (319), Expect = 2e-31
Identities = 61/112 (54%), Positives = 79/112 (70%)
Frame = +3
Query: 213 KVEKWFGSKKELAAVRTVCSHVXNMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIR 392
K++ WFG++K A++RT SHV N+I GVT+GF+YKMR VYAHFPIN IEIR
Sbjct: 59 KIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIR 118
Query: 393 NFLGXKYIXRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTV 548
NFLG K + +V+M GVT+V S K KDE++++GN +E VS S ALI Q V
Sbjct: 119 NFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHV 170
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +2
Query: 53 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRSPE-G*EMV 229
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + PE G + +
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLI--KDPETGKKKL 58
Query: 230 RIQK--GACRREDSLFTCXEH 286
+I G + S+ T H
Sbjct: 59 KIDSWFGTRKTSASIRTALSH 79
>At2g25660.1 68415.m03075 expressed protein
Length = 2146
Score = 31.5 bits (68), Expect = 0.39
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 253 AASSFLDPNHFSTFRRARVYHANVNSQVFKVPFENSAGPFNCH--QTRFHM 107
A SSF D + +FR R++ N N KVP E ++G F H + FH+
Sbjct: 729 APSSFSDVSASLSFRGQRIFLHNANGWFGKVPLE-ASGDFGIHPDEGEFHL 778
>At5g62630.1 68418.m07861 expressed protein
Length = 696
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 356 TVNGEVSIHSTHLVLEAFSYSFNHVLYM*TDCPHGGKLLFGSEPFLNLQESEG 198
T NG S ST + +A + + HGG++LFG + +L L +G
Sbjct: 337 TANGTSSSPSTAKIGKASEVRRIFTMGLPYSSSHGGQILFGPDGYLYLMTGDG 389
>At5g40690.1 68418.m04939 expressed protein
Length = 210
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 273 VNRLSSRRQAPFWIRTISQPSGERGFTMRMSTAKCL 166
VN L+SR A + + S+P+ FT + A+CL
Sbjct: 30 VNPLTSRPTAGLFTKVTSKPTNHSKFTGKCGQARCL 65
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 231 RTISQPSGERG-FTMRMSTAKCLKFLLRTPRGPLTVTRR 118
R I+ P G+ G ++ R++T K LRT GP+ V +R
Sbjct: 595 RNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKR 633
>At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protein
similar to ZIS2 [Homo sapiens] GI:4191329; contains Pfam
profile PF00641: Zn-finger in Ran binding protein and
others
Length = 288
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 120 RDFTWTVSPSGILTF*FATICFMFGLCLTQEPGKR 16
RD WT G + F F T+C M C T +PG +
Sbjct: 194 RDNDWTCPNCGNVNFSFRTVCNM-RKCNTPKPGSQ 227
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 77 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 187
+VKI D T+ V +L+ V R LK + L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,531,134
Number of Sequences: 28952
Number of extensions: 228756
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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