Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C07
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  

>SB_21409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
 Frame = +1

Query: 205 DIQIEGFNPSAEEADEGTDSAVESGVDIXLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 384
           D  + G N SAE+A +  +    +G ++ + +RLVE   +   K      K Y+KK+   
Sbjct: 47  DENLIGGNKSAEDACDDVEDGCTTGCNVVMANRLVE-IPYKTFKELLAEFKPYIKKVKEH 105

Query: 385 L-EXKAPD-QVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD-----GMVAMMEY---- 531
           + E   PD +V+ F+      +  I   FKE QFF     DCD       +  M Y    
Sbjct: 106 MKEEGCPDEEVKGFEKAAMDYILSIKKNFKEYQFF---QPDCDLGGGAHCIVFMWYPEKD 162

Query: 532 ---XDFDGTQIPIMMFFKHGLQXXK 597
               D DG   P++  FKH ++  K
Sbjct: 163 LRGVDQDGFS-PVLTVFKHAVKQVK 186


>SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = -2

Query: 217 RSGYQPCALVTNLPVTS*ITSSTNFIL*VSENISSASDNVLIDLHFDGLEAIKNN 53
           ++   PC L+  L  T      T+ +L  +E++SSA+ + + D+ FDG++ I NN
Sbjct: 101 KTAQTPCLLLLTLVFT------TSQVLTTAEDVSSATIDFVGDISFDGIQKIFNN 149


>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/86 (27%), Positives = 40/86 (46%)
 Frame = +1

Query: 298 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEXKAPDQVEVFKTNMNKVMKDILGRFKELQ 477
           H+LVE     +++  ++  +D    LVA        Q  VF+ + N V K   G  K   
Sbjct: 734 HKLVEKRLVSNQQQRSIRFRDQRPHLVA--------QGVVFEPDANDVSK---GTLKVTG 782

Query: 478 FFTGESMDCDGMVAMMEYXDFDGTQI 555
           F  G+++  + +V +  Y DF  +QI
Sbjct: 783 FVRGQTLSANRLVHLAGYGDFQISQI 808


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,404,465
Number of Sequences: 59808
Number of extensions: 316901
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)