Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C07
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    27   0.39 
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   8.4  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 17/75 (22%), Positives = 30/75 (40%)
 Frame = +1

Query: 151 SMKLFTK*PVGW*REHRADIQIEGFNPSAEEADEGTDSAVESGVDIXLNHRLVETYAFGD 330
           S +LF      W      DI + G +  A + DEG       G +    +   +T+ +  
Sbjct: 317 SWELFNSNDTNWFYSESGDIPLCGNSSGAGQCDEGYICLQGYGKNPNYGYTSFDTFGWAF 376

Query: 331 KKSYTLYLKDYMKKL 375
             ++ L  +DY + L
Sbjct: 377 LSAFRLMTQDYWENL 391


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 182 PTGHFVNNFIDQFHFVSVREHLISQ 108
           PTG  V + ID+  ++S    L+SQ
Sbjct: 561 PTGDHVISLIDEISYLSAPAPLLSQ 585


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,534
Number of Sequences: 2352
Number of extensions: 10929
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)