Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C07
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    80   1e-15
At3g05540.1 68416.m00607 translationally controlled tumor family...    77   1e-14
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    33   0.17 
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    28   4.7  
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi...    28   4.7  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    28   6.2  
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   8.2  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 53/140 (37%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
 Frame = +1

Query: 184 W*REHRADIQIEGFNPSAEEA--DEGTDSAVESGVDIXLNHRLVETYAFGDKKSYTLYLK 357
           W      D+ I G NPSAEE   DEG D + +  VDI    RL E   + DKK +  Y+K
Sbjct: 35  WVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIK 92

Query: 358 DYMKKLVAKLEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXD 537
            Y+K L  KL  +  DQ  VFK  +    K +L R  + QFF GE M  D  +    Y  
Sbjct: 93  KYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK- 148

Query: 538 FDGTQIPIMMFFKHGLQXXK 597
            +G+  P  ++F HGL+  K
Sbjct: 149 -EGSTNPTFLYFAHGLKEVK 167


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
 Frame = +1

Query: 211 QIEGFNPSAEEA--DEGTDSAVESGVDIXLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 384
           ++EG NPS EE   DEG D      VDI    RL E  +F DKK + +++K Y+K+L  K
Sbjct: 30  EVEGKNPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPK 88

Query: 385 LEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDC-DGMVAMMEYXDFDGTQIPI 561
           L+    +  E+FK ++    K ++ + K+ QFF GESM+  +G +    Y   +G   P 
Sbjct: 89  LDS---ENQELFKKHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYR--EGATDPT 143

Query: 562 MMFFKHGLQXXK 597
            ++  +GL+  K
Sbjct: 144 FLYLAYGLKEIK 155


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
 Frame = +1

Query: 253 GTDSAVESGVDIXLNHRLVETYAFGDKKSYTLYLK-------DYMKKLVAKLEXKAPDQV 411
           G D   +SG++    + +   Y  G+  + +LY +       D M+  + KL    P  +
Sbjct: 184 GIDWRKQSGLETLAPYYISVKYFSGNPLALSLYEEMLSHMKSDKMEVKLLKLNHPPPQIM 243

Query: 412 EVFKTNMNKVMKDILGRFKELQ-FFTGESMD 501
           EVFK+N N + ++    F ++  FF GE  D
Sbjct: 244 EVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 217 EGFNPSAEEADEGTDSAVESG 279
           EGF P+AEEAD+G  S +  G
Sbjct: 272 EGFLPTAEEADDGIGSMMMGG 292


>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
           to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00240: Ubiquitin family, PF00632: HECT-domain
           (ubiquitin-transferase)
          Length = 873

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 318 VCFD*PVVQXYVNSALDGRVRALVSLFSRRIKTLDLDISPVLSS 187
           V F  P+V    ++AL+  +R L  LF   + T+DL +  V SS
Sbjct: 369 VAFPIPIVLPMQSTALEAEIRHLHRLFGSLLTTMDLCMCRVESS 412


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 553 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 467
           F YH  +Y+ +W  C H N ++ Q +  VP
Sbjct: 255 FLYHGRMYVSAWHICFHSNVFSKQMKVVVP 284


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 430 MNKVMKDILGRFKELQFFTGE---SMDCDGM 513
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,301,041
Number of Sequences: 28952
Number of extensions: 226345
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)