Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C04
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0504 + 21535192-21535194,21535306-21535406,21536964-215370...    30   0.93 
03_05_0833 - 28045442-28045881,28045961-28046063,28046172-280462...    28   3.7  

>06_03_0504 +
           21535192-21535194,21535306-21535406,21536964-21537042,
           21537128-21537175
          Length = 76

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 310 FFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXXXXXLWVGIYV 179
           FF+YE TS++ +R + KE+  + +A+           L  G+YV
Sbjct: 33  FFIYEATSSRRNRSLAKEIATATIASVFLGFGSLFVLLASGVYV 76


>03_05_0833 -
           28045442-28045881,28045961-28046063,28046172-28046203,
           28046299-28046516,28046606-28046721,28047757-28048000,
           28048423-28048510,28048596-28048667,28048758-28048869,
           28049047-28049115,28049627-28049685,28050067-28050325
          Length = 603

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 157 IIPYIDITHKSLPIATRTKY 216
           +IPY+++ H  LP+A + KY
Sbjct: 192 LIPYVNLNHYDLPLALQKKY 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,986,787
Number of Sequences: 37544
Number of extensions: 167394
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)