Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C04
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)                31   0.72 
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 29   1.7  
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                27   6.7  
SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)                    27   8.9  

>SB_28146| Best HMM Match : Na_Ca_ex (HMM E-Value=0.039)
          Length = 751

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 347 FVARNRNIXHGLVLRLRSYKY*SLKRYVQRVTFIIG-GRLIFWFRYFVLVAMGR 189
           F   NR     ++  L +  +  +  Y QR+T +   G +IF+F Y V+V +GR
Sbjct: 587 FHLNNRPFTRDVLFYLGAVSWMFITMYRQRITMLEAIGFIIFYFAYVVVVIVGR 640


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 120 SIEEWCYIIHNLNYTLH*YHT*IPTHSNKNKIPK 221
           +I E+ +I+H LNY LH   T I + S   KI K
Sbjct: 424 AIGEFAFILHLLNYKLHLMRTAIFSSSKNEKIVK 457


>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 309 SSFTKLQVLK---PQEICSKSYFYHWWPPY 229
           +SF  +QVLK    + IC+ + FYH W  Y
Sbjct: 349 ASFAAVQVLKGDISEAICTHALFYHIWRKY 378


>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 273 EICSKSYF-YHWWPPYFLVSVFCSC 202
           E+CS  Y+ Y+  PPY     +C+C
Sbjct: 610 EMCSGGYYVYYLRPPYVCSMAYCAC 634


>SB_22534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 303 FTKLQVLKPQEICSKSYFYHWWPPYFLVSV-FCSCCYG*GFMCDI 172
           F +   + P+  C   Y   WWP Y  V + F  C +  GF+  I
Sbjct: 154 FAESLTILPRGSCQNDYA--WWPNYTTVQLTFVLCAFTPGFVIPI 196


>SB_51781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 375 FIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRN 500
           F+G  Y ++  I R+  +  +    +  K  KTR TQR  RN
Sbjct: 47  FVGSTYVVVGKI-RVAVLGCIASPELIYKEKKTRLTQRIFRN 87


>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
          Length = 486

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 306 KNQXVXNIPIPSNKKVRCGKTAGFIGDVY 392
           + Q   N P P+ KKV  G  A  + DVY
Sbjct: 340 QTQGELNSPTPTAKKVSLGHIASVVSDVY 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,613
Number of Sequences: 59808
Number of extensions: 216248
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)