Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C04
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical ...    48   5e-06
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    28   4.5  
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    28   4.5  
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    28   4.5  
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    28   4.5  
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    28   4.5  
AF003740-6|AAK68240.1|  238|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical
           protein Y57E12AM.1 protein.
          Length = 79

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 26/79 (32%), Positives = 39/79 (49%)
 Frame = -2

Query: 415 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXXWFFVYEVTSTKASRDMFKELLLSLVA 236
           ++I  M RYT+P+N A  P                F + +VTSTK +R++ KEL ++  +
Sbjct: 1   MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60

Query: 235 AXXXXXXXXXXXLWVGIYV 179
           +           LWVGIYV
Sbjct: 61  SVFLGFGSVFLLLWVGIYV 79


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
            protein F35D11.11a protein.
          Length = 1840

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 378  IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNE 503
            + D   +I+ + R +     ERNTIEN+   T Q Q  L NE
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNE 1402


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
            protein F35D11.11c protein.
          Length = 1898

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 378  IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNE 503
            + D   +I+ + R +     ERNTIEN+   T Q Q  L NE
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNE 1402


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
            protein F35D11.11d protein.
          Length = 1671

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 378  IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNE 503
            + D   +I+ + R +     ERNTIEN+   T Q Q  L NE
Sbjct: 1123 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNE 1162


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
            protein F35D11.11b protein.
          Length = 1911

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 378  IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNE 503
            + D   +I+ + R +     ERNTIEN+   T Q Q  L NE
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNE 1402


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 227 FWFRYFVLVAMGRDLCVIS 171
           FWFRY+VLV+ G   C+ S
Sbjct: 142 FWFRYYVLVSFG--FCIYS 158


>AF003740-6|AAK68240.1|  238|Caenorhabditis elegans Hypothetical
           protein C41D11.5 protein.
          Length = 238

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 357 CGKTAGFIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQR 488
           CG T   + D  R    I+R +FM    +    N+TNKT +  R
Sbjct: 133 CGDTCAELNDFER--RKINRDLFMHSCSKEQQSNETNKTNKNHR 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,324,095
Number of Sequences: 27780
Number of extensions: 171307
Number of successful extensions: 425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)