Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C04
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29735.1 68417.m04234 expressed protein contains Pfam domain ...    35   0.036
At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    28   3.1  

>At4g29735.1 68417.m04234 expressed protein contains Pfam domain
           PF05251: Uncharacterised protein family (UPF0197)
          Length = 76

 Score = 34.7 bits (76), Expect = 0.036
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -2

Query: 385 SPINPAVFPHXXXXXXXXXXXXXXWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXXX 206
           SPI  A++P                FF+YE TS++ +R + KEL  S VA+         
Sbjct: 8   SPIPVALYPTLSVFTLAIGLVITAIFFIYEATSSRKNRSVGKELATSAVASVFLGFGSLF 67

Query: 205 XXLWVGIYV 179
             L  G+YV
Sbjct: 68  LLLASGVYV 76


>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 189 PTHSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQXVXNIPIPSNKK 350
           P +SN NK  KPEN+ AT +K++ +   +     + S T+     +   PS+++
Sbjct: 441 PENSNNNK--KPENECATTNKNDVMGEMIRTHRRLLSETREIDEASCNFPSSRR 492


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,600,567
Number of Sequences: 28952
Number of extensions: 151868
Number of successful extensions: 322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)