Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C03
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.71 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.71 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.0  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 61  HRLGNVRPYARRGSMS*GVPLQTPG 135
           H      PY   G    G+PLQ PG
Sbjct: 171 HHYARYHPYPNFGVPPAGIPLQNPG 195


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 81  PIRKKRKYELGRPAANTRLGPQRIHSXSF 167
           P+R   ++    PA N   GP   H   F
Sbjct: 36  PLRTSYQHHFNSPAGNAHTGPTGTHDAGF 64


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 127 TPGSVLSVSTPXRSRGGNTKYRAL 198
           T GS++ V  P    GGN ++  +
Sbjct: 285 TDGSIIGVRAPYLRVGGNKQFEMM 308


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 127 TPGSVLSVSTPXRSRGGNTKYRAL 198
           T GS++ V  P    GGN ++  +
Sbjct: 292 TDGSIIGVRAPYLRVGGNKQFEMM 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,593
Number of Sequences: 336
Number of extensions: 3104
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)