Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C03
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 107 1e-24
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 107 2e-24
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 4.1
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 7.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.1
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.4
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 25 9.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.4
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 107 bits (258), Expect = 1e-24
Identities = 73/204 (35%), Positives = 104/204 (50%), Gaps = 1/204 (0%)
Frame = +2
Query: 23 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 202
MGI+RD HKR ATG + + ++ + R R + V V R +
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKF--ELGRQPSNTRIGPKRIHEVRVRGGNKKFRAL 58
Query: 203 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYT 379
+ + ++K ++ H + N V+ L K+AIV +DA PFR WYE+HY
Sbjct: 59 RLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118
Query: 380 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASR 559
+ +G KG K T +S+ RK+ AR +KV+ AL QF GRL A V+SR
Sbjct: 119 ILMG-SKGKKATSTPNP-----KSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSR 172
Query: 560 PGQCGRXDGYILQXKELEFYLTKI 631
PGQ GR DGYIL+ +EL FYL ++
Sbjct: 173 PGQSGRCDGYILEGEELHFYLRRM 196
Score = 81.0 bits (191), Expect = 1e-16
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 318
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL +
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 107 bits (256), Expect = 2e-24
Identities = 73/204 (35%), Positives = 104/204 (50%), Gaps = 1/204 (0%)
Frame = +2
Query: 23 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 202
MGI+RD HKR ATG + + ++ + R R + V V R +
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKF--ELGRQPSNTRIGPKRIHEVRVRGGNKKFRAL 58
Query: 203 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYT 379
+ + ++K ++ H + N V+ L K+AIV +DA PFR WYE+HY
Sbjct: 59 RLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118
Query: 380 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASR 559
+ +G KG K T +S+ RK+ AR +KV+ AL QF GRL A V+SR
Sbjct: 119 ILMG-SKGKKATATPTP-----KSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSR 172
Query: 560 PGQCGRXDGYILQXKELEFYLTKI 631
PGQ GR DGYIL+ +EL FYL ++
Sbjct: 173 PGQSGRCDGYILEGEELHFYLRRM 196
Score = 81.0 bits (191), Expect = 1e-16
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 318
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL +
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = +2
Query: 245 AKPVSLMLCIMHLTMN-WCVQRPLFKNAIVVVD---ATPF---RQWYESHYTLP 385
AK S+ LC+ HL + + + PLF +I + D AT + W + Y P
Sbjct: 412 AKTSSIFLCLWHLVLTYYYLPDPLFLRSITLTDLESATSYFKDDSWMDDDYISP 465
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 284 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 198
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 208 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFP 68
CPD + G Y V + ++R PS+++A ++ LF+R+ ++P
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYP 355
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 181 TKYRALRLDTGNFSWGSECSTRKTRI 258
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 533 RLLACVASRPGQCGRXDGYILQXKELEFYLTKIKFNR 643
RLL + + G G DGY LQ + YL+K+ + R
Sbjct: 100 RLLEKLEIKEGNYG--DGYALQPSYIHEYLSKVLYAR 134
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 82 PYARRGSMS*GVP--LQTPGSVLSVSTPXRSRGGNTKY 189
PY R ++ +P L G +LSV SRG TKY
Sbjct: 1174 PYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKY 1211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,303
Number of Sequences: 5004
Number of extensions: 49721
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -