Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C03
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 127 9e-30
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 111 3e-25
01_06_0657 - 30940020-30940034,30940226-30940861 30 1.8
01_02_0013 + 10162478-10163581 29 2.4
03_01_0350 - 2753217-2754152 29 4.2
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.4
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 27 9.7
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 9.7
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 127 bits (306), Expect = 9e-30
Identities = 80/213 (37%), Positives = 118/213 (55%), Gaps = 9/213 (4%)
Frame = +2
Query: 23 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 202
MGISRD HKRRATG + A ++ + + + + SS +R V V R +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYEL-GRQPANTKLSSNKTVRRVRVRGGNLKWRAL 59
Query: 203 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYT 379
+ + + + ++ + + + N V+ + L K+AIV VDA PF+QWY +HY
Sbjct: 60 RLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG 119
Query: 380 LPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGR 535
+ +GRKK A+ E E A K+S RK RQ+ ++ + EQF +GR
Sbjct: 120 VDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGR 179
Query: 536 LLACVASRPGQCGRXDGYILQXKELEFYLTKIK 634
LLAC++SRPGQCGR DGYIL+ KELEFY+ K++
Sbjct: 180 LLACISSRPGQCGRADGYILEGKELEFYMKKLQ 212
Score = 94.3 bits (224), Expect = 7e-20
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 318
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLV+
Sbjct: 48 RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVK 99
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 69 GKRAPIRKKRKYELGRPAANTRLGPQR 149
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 111 bits (268), Expect = 3e-25
Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 26/230 (11%)
Frame = +2
Query: 23 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 202
MGISRD HKRRATG + A ++ + + + SS +R V V R +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKL-SSNKTVRRVRVRGGNVKWRAL 59
Query: 203 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYT 379
+ + + + ++ + + + N V+ + L K+AIV VDA PF+QWY +HY
Sbjct: 60 RLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG 119
Query: 380 LPLGRKKGA-------------------------KLTEAEEAIINKKRSQKTARKYLARQ 484
+ +GRKK A K +AE K+S RK RQ
Sbjct: 120 VDIGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQ 179
Query: 485 RLAKVEGALXEQFHTGRLLACVASRPGQCGRXDGYILQXKELEFYLTKIK 634
+ ++ + EQF +GRLLAC++SRPGQCGR DGYIL+ KELEFY+ K++
Sbjct: 180 QGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 229
Score = 94.7 bits (225), Expect = 6e-20
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 318
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLV+
Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVK 99
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 69 GKRAPIRKKRKYELGRPAANTRLGPQR 149
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
>01_06_0657 - 30940020-30940034,30940226-30940861
Length = 216
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 37 GSLA*AKGHRLGNVRPYARRGSMS*GVPLQTPGSVLSVSTPXRSRGGNTKYRALRL-DTG 213
G++ A G+R+ P R GSMS G + GS +S S RG + + A G
Sbjct: 117 GTIGAAAGNRMRGFVPPGRGGSMSNGAGVVGHGSSMSHSAGVSGRGSSMSHGATGYGGFG 176
Query: 214 NFSWGSECSTRKT 252
W + S+ T
Sbjct: 177 GGGWDAGTSSAPT 189
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 176 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 313
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>03_01_0350 - 2753217-2754152
Length = 311
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 45 GISEGPPAGKRAPIRKKRKYELGRPAANTR 134
G + PPA KR P R+++ +G A +TR
Sbjct: 242 GAAAAPPATKRTPQRRRKPESVGDEAIDTR 271
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 398 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHT 529
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 217 FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQE 321
F W C+T ++ V + S +EL+ T + Q+
Sbjct: 728 FQWSGRCTTEDFKLNQVCIDGSRDELLETDVIRQD 762
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 185 STVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 292
+ + C+W + SLG R Q++K + L ++ + +N
Sbjct: 286 TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,664,011
Number of Sequences: 37544
Number of extensions: 361083
Number of successful extensions: 1037
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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