Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C03
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0) 146 1e-35
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068) 31 0.61
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88) 29 2.5
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 29 4.3
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7) 28 7.5
SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08) 27 9.9
SB_41614| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
Length = 192
Score = 146 bits (355), Expect = 1e-35
Identities = 69/114 (60%), Positives = 84/114 (73%)
Frame = +2
Query: 305 RPLFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 484
+ L KN IV VD+TPFRQWYE+HY +P+GRKK + TE E+ I+NKKRS RK AR+
Sbjct: 78 KTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARK 137
Query: 485 RLAKVEGALXEQFHTGRLLACVASRPGQCGRXDGYILQXKELEFYLTKIKFNRA 646
AKV + EQF TGRL ACV+SRPGQ GR DGYIL+ KELEFY+ K+K +A
Sbjct: 138 ANAKVAPGMEEQFVTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKA 191
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQEC 324
R+RGGN K+RA RLDT NFSWGSE TRK RIIDVVYNASNNELVRTKTLV+ C
Sbjct: 31 RTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVYNASNNELVRTKTLVKNC 84
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +3
Query: 81 PIRKKRKYELGRPAANTRLGPQRIH 155
P+R KRK+ELGRP ANT++G +RIH
Sbjct: 4 PLRHKRKFELGRPPANTKIGTKRIH 28
>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
Length = 147
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = +1
Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 318
++ GG+TK +ALR++ G ++ S+ + I+ V+++ +N E + +V+
Sbjct: 44 KAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVK 95
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 212 VTSLGDRNVQLAKPVSLMLCIMHLTMN--WCVQRPLFKNAIVVVDATPFRQWYESH 373
V +L + V++ P+ L +MH N + + K +IV VD PF W++ +
Sbjct: 61 VYTLKSQGVEVEAPI---LSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113
>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
Length = 842
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 517 AIPHGAFAGLRGESPRSVWSXR 582
A PH A +G+R SPR +W R
Sbjct: 108 ACPHHAVSGVRVSSPRGIWCSR 129
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 517 AIPHGAFAGLRGESPRSVWSXRWL 588
A PH A +G+R PRS+W R L
Sbjct: 139 AYPHHAVSGVRVSPPRSIWCSRVL 162
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 517 AIPHGAFAGLRGESPRSVWSXRWL 588
A PH A +G+R PRS+W R L
Sbjct: 201 ACPHHAVSGVRVSPPRSIWCSRVL 224
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 517 AIPHGAFAGLRGESPRSVWSXR 582
A PH A +G+R PRS+W R
Sbjct: 232 ACPHHAVSGVRVSPPRSIWCSR 253
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 443 KRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRXDGYILQXK 604
++S+K K + +L +EG H G LL S C R GY +Q +
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 157 PXRSRGGNTKYRALRLDTGNFS 222
P +GGN +YR + DTG FS
Sbjct: 1643 PDTGQGGNVEYRIVSPDTGKFS 1664
>SB_59196| Best HMM Match : DUF593 (HMM E-Value=1.7)
Length = 1376
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 190 RALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQECNCCSR 339
R+LR D ++S S CS++ + + Y A +E+ K ++ C R
Sbjct: 1268 RSLRSDCHSWSCHSNCSSKSSDVESEFYKAKCDEIKSEKESLERAYECER 1317
>SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)
Length = 824
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 128 VCSGTP*LILPLLAYGRTFPSRWPF 54
+ SG +PL +YGRT RWP+
Sbjct: 469 ILSGDKGGAVPLFSYGRTTLQRWPY 493
>SB_41614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 938
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 84 IRKKRKYELGRPAANTRLGPQRIHSXSFTWW 176
+ KR L RP + L Q++ S F WW
Sbjct: 881 VAAKRLQHLNRPNNDAILDLQKLQSARFVWW 911
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,150,490
Number of Sequences: 59808
Number of extensions: 412260
Number of successful extensions: 1049
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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