Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C03
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles ...   151   2e-38
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   0.89 
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   3.6  
AF364132-2|AAL35509.1|  411|Anopheles gambiae putative odorant r...    24   4.8  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   6.3  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   6.3  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   6.3  
AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F rec...    23   8.3  

>U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S8 mRNA, complete cds.
           ).
          Length = 135

 Score =  151 bits (366), Expect = 2e-38
 Identities = 68/110 (61%), Positives = 89/110 (80%)
 Frame = +2

Query: 305 RPLFKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 484
           + L KNAI+V+DA+PFRQWYESHY LPLG+K+  +L   EE +++KKR++   RKY+ RQ
Sbjct: 23  KTLVKNAIIVIDASPFRQWYESHYLLPLGKKR--ELKAGEEDVLSKKRTKSNLRKYVKRQ 80

Query: 485 RLAKVEGALXEQFHTGRLLACVASRPGQCGRXDGYILQXKELEFYLTKIK 634
           + AK++ A+ EQF+ GRLLAC++SRPGQ GR DGYIL+ KELEFYL KIK
Sbjct: 81  KNAKIDPAVEEQFNAGRLLACISSRPGQVGRADGYILEGKELEFYLKKIK 130



 Score = 48.8 bits (111), Expect = 1e-07
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +1

Query: 244 RKTRIIDVVYNASNNELVRTKTLVQ 318
           RK RIIDVVYNASNNEL+RTKTLV+
Sbjct: 3   RKARIIDVVYNASNNELIRTKTLVK 27


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 152 PLRFVHVVEILSTVRCVWTP--VTSLGDRNVQLAK 250
           PLR VH   +LS V C+ +P  V+ L  R + L K
Sbjct: 860 PLRDVHGTVVLSCVNCIKSPKAVSVLNSRWIPLNK 894


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 60  PPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSXSF-TWW 176
           PPA +R+   +   +   RP +  +  P+R     F +WW
Sbjct: 274 PPARRRSRSTRPTSWPRSRPTSKPKRLPRRRRPFFFSSWW 313


>AF364132-2|AAL35509.1|  411|Anopheles gambiae putative odorant
           receptor Or3 protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 360 HCLNGVASTTTIAFLNKGLCTHQFIVRCI 274
           HCL  VA       LN+ +  HQ ++ C+
Sbjct: 247 HCLARVAQDRAEKELNEIISMHQRVLNCV 275


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 314 FKNAIVVVDATPFRQWYESHYTLP 385
           FK+     D TP   W+ SH T P
Sbjct: 35  FKDESFGHDQTPAGSWWSSHLTEP 58


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 314 FKNAIVVVDATPFRQWYESHYTLP 385
           FK+     D TP   W+ SH T P
Sbjct: 35  FKDESFGHDQTPAGSWWSSHLTEP 58


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 245 RVEHSDPQEKLPVSRRSARYLVFPPRERXGVDTLRTEP 132
           +V+ S+P E+ PV  +S    +FP      ++T  T+P
Sbjct: 355 KVKSSEPVEQCPVKLKSIIETLFPTHPT--INTPETDP 390


>AY579078-1|AAT81602.1|  425|Anopheles gambiae neuropeptide F
           receptor protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 369 DSYHCLNGVASTTTIAFLNKGLCTHQFIVRCIIH 268
           DS   +  +A  T I  ++  L +  FI+R +IH
Sbjct: 151 DSLQLMGAIAILTGIWIISIVLASPMFIIRQLIH 184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,572
Number of Sequences: 2352
Number of extensions: 13412
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)