Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_C03
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 162 2e-40
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.53
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.53
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.53
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.53
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.53
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.53
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 29 3.8
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 6.6
AF077544-2|AAK39243.2| 644|Caenorhabditis elegans Hypothetical ... 27 8.7
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 162 bits (394), Expect = 2e-40
Identities = 90/210 (42%), Positives = 123/210 (58%), Gaps = 2/210 (0%)
Frame = +2
Query: 23 MGISRDHWHKRRATG-WETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRC 199
MGISRD WHKR TG + H + + R + A+ +R V R
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRK---FELGRPAANTKIGAHRVRLVRTRGGNEKYRA 57
Query: 200 VWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHY 376
+ + + Q + ++ + + T N V+ + L K AI+ VDA PFRQWYE+HY
Sbjct: 58 LRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHY 117
Query: 377 TLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVAS 556
LPL RKK AKL+E + AI+NKKRS T +KY RQ+ A V+ L EQF+TGRLLA ++S
Sbjct: 118 ALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISS 177
Query: 557 RPGQCGRXDGYILQXKELEFYLTKIKFNRA 646
PGQ G+ +GYIL+ KEL+FYL KI+ +A
Sbjct: 178 SPGQVGQANGYILEGKELDFYLRKIRAKKA 207
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +2
Query: 392 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXE 517
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 296 TNSLLDALYTTSMIRVLRV 240
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>AF077544-2|AAK39243.2| 644|Caenorhabditis elegans Hypothetical
protein H22K11.2 protein.
Length = 644
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 340 IYYNNCILEQGSLYAP 293
IYYN I+E GSLY P
Sbjct: 419 IYYNTTIIECGSLYIP 434
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,442,698
Number of Sequences: 27780
Number of extensions: 292173
Number of successful extensions: 776
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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