Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C03
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   195   3e-52
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  195 bits (476), Expect = 3e-52
 Identities = 105/212 (49%), Positives = 136/212 (64%), Gaps = 4/212 (1%)
 Frame = +2

Query: 23  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILS---TV 193
           MGISRDHWHKRRATG +     ++ +  +     +  A +   P R +H V         
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELG----RPAANTKLGPQR-IHTVRTRGGNKKY 55

Query: 194 RCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYES 370
           R +     +    +    +   ++  + + + N  V+ + L KNAIV +DATPFRQWYE 
Sbjct: 56  RALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEG 115

Query: 371 HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACV 550
           HY LPLGRK+GAKLTEAEE ++NKKRS+K   KY ARQR AKVE AL EQF TGR+LAC+
Sbjct: 116 HYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACI 175

Query: 551 ASRPGQCGRXDGYILQXKELEFYLTKIKFNRA 646
           +SRPGQCGR DGYIL+ KELEFY+ +IK  +A
Sbjct: 176 SSRPGQCGREDGYILEGKELEFYMRRIKSKKA 207



 Score =  105 bits (253), Expect = 3e-25
 Identities = 48/52 (92%), Positives = 51/52 (98%)
 Frame = +1

Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 318
           R+RGGN KYRALRLDTGNFSWGSEC+TRKTRIIDVVYNASNNELVRTKTLV+
Sbjct: 47  RTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVK 98



 Score = 61.3 bits (142), Expect = 8e-12
 Identities = 26/30 (86%), Positives = 29/30 (96%)
 Frame = +3

Query: 69  GKRAPIRKKRKYELGRPAANTRLGPQRIHS 158
           GKR PIRKKRK+ELGRPAANT+LGPQRIH+
Sbjct: 16  GKRKPIRKKRKFELGRPAANTKLGPQRIHT 45


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 340 IYYNNCILEQGSLYAPIHC 284
           +YYN   +EQ  +  PI+C
Sbjct: 107 LYYNINYIEQIPIPVPIYC 125


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 340 IYYNNCILEQGSLYAPIHC 284
           +YYN   +EQ  +  PI+C
Sbjct: 107 LYYNINYIEQIPIPVPIYC 125


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 340 IYYNNCILEQGSLYAPIHC 284
           +YYN   +EQ  +  PI+C
Sbjct: 107 LYYNINYIEQIPIPVPIYC 125


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,476
Number of Sequences: 438
Number of extensions: 3682
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)