Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C03
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   122   2e-28
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   120   8e-28
At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    30   1.5  
At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical...    29   2.0  
At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical...    29   2.0  
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)...    29   2.7  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  122 bits (295), Expect = 2e-28
 Identities = 82/215 (38%), Positives = 117/215 (54%), Gaps = 11/215 (5%)
 Frame = +2

Query: 23  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 202
           MGISRD  HKRRATG +     ++ +  +       +  SS   +R + V       R +
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKL-SSNKTVRRIRVRGGNVKWRAL 59

Query: 203 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYT 379
                +    +    +   ++  + + + N  V+ + L K+AIV VDA PF+QWY SHY 
Sbjct: 60  RLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYG 119

Query: 380 LPLGRKK-GAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAKVEGALXEQFHT 529
           + LGRKK  A  T     E EEA +      K+S    RK  +RQ    ++  + +QF +
Sbjct: 120 VELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFAS 179

Query: 530 GRLLACVASRPGQCGRXDGYILQXKELEFYLTKIK 634
           GRLLAC++SRPGQCGR DGYIL+ KELEFY+ KI+
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQ 214



 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 43/52 (82%), Positives = 49/52 (94%)
 Frame = +1

Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 318
           R RGGN K+RALRLDTGN+SWGSE +TRKTR++DVVYNASNNELVRTKTLV+
Sbjct: 48  RVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVK 99



 Score = 35.1 bits (77), Expect = 0.041
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 69  GKRAPIRKKRKYELGRPAANTRLGPQR 149
           GK+   RKKRKYE+GR  ANT+L   +
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNK 42


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  120 bits (289), Expect = 8e-28
 Identities = 77/205 (37%), Positives = 110/205 (53%), Gaps = 1/205 (0%)
 Frame = +2

Query: 23  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 202
           MGISRD  HKRRATG +     ++ +  +       +  SS   +R + V       R +
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKL-SSNKTVRRIRVRGGNVKWRAL 59

Query: 203 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVVDATPFRQWYESHYT 379
                +    +  + +   ++    + + N  V+ + L K+AIV VDA PF+Q Y  HY 
Sbjct: 60  RLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYG 119

Query: 380 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASR 559
           + +GRKK  +    EE     K+S    RK   RQ    ++  L EQF +GRLLAC+ASR
Sbjct: 120 VDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASR 175

Query: 560 PGQCGRXDGYILQXKELEFYLTKIK 634
           PGQCGR DGYIL+ KELEFY+ K++
Sbjct: 176 PGQCGRADGYILEGKELEFYMKKLQ 200



 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 43/52 (82%), Positives = 47/52 (90%)
 Frame = +1

Query: 163 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVQ 318
           R RGGN K+RALRLDTGNFSWGSE  TRKTRI+DV YNASNNELVRT+TLV+
Sbjct: 48  RVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVK 99



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 69  GKRAPIRKKRKYELGRPAANTRLGPQR 149
           GK+   RKKRKYELGR  ANT+L   +
Sbjct: 16  GKQKMWRKKRKYELGRQPANTKLSSNK 42


>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/85 (29%), Positives = 40/85 (47%)
 Frame = -2

Query: 386 EATYNATHTTA*MELHLLQQLHS*TRVFVRTNSLLDALYTTSMIRVLRVEHSDPQEKLPV 207
           + ++N  H+   +E   L    + +   +R+ S LD+L     +RVL V H+    +LPV
Sbjct: 552 DLSHNELHSAEGLEAMQLLCCLNLSHNRIRSFSALDSLRHLKQLRVLDVSHNHICGELPV 611

Query: 206 SRRSARYLVFPPRERXGVDTLRTEP 132
              + RYL   P    G +T R  P
Sbjct: 612 D--TTRYLCSSPLSNSG-ETGREVP 633


>At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 359

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 118 PLQTPGSVLSVSTPXRSRG 174
           PL TPG++LS+ TP +S G
Sbjct: 108 PLTTPGTLLSIDTPTKSTG 126


>At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 382

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 118 PLQTPGSVLSVSTPXRSRG 174
           PL TPG++LS+ TP +S G
Sbjct: 108 PLTTPGTLLSIDTPTKSTG 126


>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
           gibberellin-responsive protein 2 identical to SP|P46688
           Gibberellin-regulated protein 2 precursor {Arabidopsis
           thaliana}
          Length = 99

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 298 RTKTLVQECN-CCSRCNSI 351
           RTK  ++ CN CCSRCN +
Sbjct: 54  RTKLCLRACNSCCSRCNCV 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,704
Number of Sequences: 28952
Number of extensions: 273072
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)