Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_C02
         (379 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   1.3  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   1.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   3.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   9.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.5  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/63 (17%), Positives = 25/63 (39%)
 Frame = -1

Query: 277 WAATLRATIRRCPNNCSSVSSARRELWNRLPWYHQYMSRSLWVHIIEXYALFVFVNEICR 98
           W   + A   R   + +  ++   E+WN+    ++   R   + ++    L   +    +
Sbjct: 330 WLLVMVAMFSRTQQSANKTATFVHEIWNKYALKNEVDKRVRHLQLVAIRLLNTKLQFTAK 389

Query: 97  DFF 89
           DFF
Sbjct: 390 DFF 392


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/63 (17%), Positives = 25/63 (39%)
 Frame = -1

Query: 277 WAATLRATIRRCPNNCSSVSSARRELWNRLPWYHQYMSRSLWVHIIEXYALFVFVNEICR 98
           W   + A   R   + +  ++   E+WN+    ++   R   + ++    L   +    +
Sbjct: 286 WLLVMVAMFSRTQQSANKTATFVHEIWNKYALKNEVDKRVRHLQLVAIRLLNTKLQFTAK 345

Query: 97  DFF 89
           DFF
Sbjct: 346 DFF 348


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
          recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 38 AQTAAPGGDTIFGKILRKE 94
          A  A PGG T+  K LRK+
Sbjct: 13 ASEAFPGGRTLVEKGLRKQ 31


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 41  QTAAPGGDTIFGKILRKEIP 100
           QT+AP G  I    LRK  P
Sbjct: 95  QTSAPTGPPIVRCALRKHKP 114


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 377 PSSEDMNVKVVNALGAILSIGNNEAEAC 294
           P    +  K+++ L  + ++GN  +E C
Sbjct: 498 PKPGTIFAKLLSVLTELRTLGNQNSEMC 525


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,169
Number of Sequences: 336
Number of extensions: 1770
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)